Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina
Tobamovirus fructirugosum (ToBRFV) and Crinivirus tomatichlorosis (ToCV) are emerging viral threats to tomato production worldwide, with expanding global distribution. Both viruses exhibit distinct biological characteristics and transmission mechanisms that influence their spread. This study aimed t...
| Autores principales: | , , , , , , , , , , , |
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| Formato: | info:ar-repo/semantics/artículo |
| Lenguaje: | Inglés |
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MDPI
2025
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.12123/21946 https://www.mdpi.com/1999-4915/17/4/533 https://doi.org/10.3390/v17040533 |
| _version_ | 1855038488427102208 |
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| author | Ibanez, Julia Magali Zambrana Montaño, Romina Micaela Gonzalez Carreras, Pamela Stefanía Obregon, Veronica Gabriela Irazoqui, Jose Matias Vera, Pablo Alfredo Lattar, Tatiana Elisabet Blanco Fernandez, María D. Puebla, Andrea Fabiana Amadio, Ariel Torres, Carolina Lopez Lambertini, Paola Maria |
| author_browse | Amadio, Ariel Blanco Fernandez, María D. Gonzalez Carreras, Pamela Stefanía Ibanez, Julia Magali Irazoqui, Jose Matias Lattar, Tatiana Elisabet Lopez Lambertini, Paola Maria Obregon, Veronica Gabriela Puebla, Andrea Fabiana Torres, Carolina Vera, Pablo Alfredo Zambrana Montaño, Romina Micaela |
| author_facet | Ibanez, Julia Magali Zambrana Montaño, Romina Micaela Gonzalez Carreras, Pamela Stefanía Obregon, Veronica Gabriela Irazoqui, Jose Matias Vera, Pablo Alfredo Lattar, Tatiana Elisabet Blanco Fernandez, María D. Puebla, Andrea Fabiana Amadio, Ariel Torres, Carolina Lopez Lambertini, Paola Maria |
| author_sort | Ibanez, Julia Magali |
| collection | INTA Digital |
| description | Tobamovirus fructirugosum (ToBRFV) and Crinivirus tomatichlorosis (ToCV) are emerging viral threats to tomato production worldwide, with expanding global distribution. Both viruses exhibit distinct biological characteristics and transmission mechanisms that influence their spread. This study aimed to reconstruct the complete genomes of ToBRFV and ToCV from infected tomato plants and wastewater samples in Argentina to explore their global evolutionary dynamics. Additionally, it compared the genetic diversity of ToBRFV in plant tissue and sewage samples. Using metagenomic analysis, the complete genome sequences of two ToBRFV isolates and two ToCV isolates from co-infected tomatoes, along with four ToBRFV isolates from sewage, were obtained. The analysis showed that ToBRFV exhibited higher genetic diversity in environmental samples than in plant samples. Phylodynamic analysis indicated that both viruses had a recent, single introduction in Argentina but predicted different times for ancestral diversification. The evolutionary analysis estimated that ToBRFV began its global diversification in June 2013 in Israel, with rapid diversification and exponential growth until 2020, after which the effective population size declined. Moreover, ToCV’s global expansion was characterized by exponential growth from 1979 to 2010, with Turkey identified as the most probable location with the current data available. This study highlights how sequencing and monitoring plant viruses can enhance our understanding of their global spread and impact on agriculture. |
| format | info:ar-repo/semantics/artículo |
| id | INTA21946 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | INTA219462025-04-08T11:52:27Z Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina Ibanez, Julia Magali Zambrana Montaño, Romina Micaela Gonzalez Carreras, Pamela Stefanía Obregon, Veronica Gabriela Irazoqui, Jose Matias Vera, Pablo Alfredo Lattar, Tatiana Elisabet Blanco Fernandez, María D. Puebla, Andrea Fabiana Amadio, Ariel Torres, Carolina Lopez Lambertini, Paola Maria Tomate Virus de las Plantas Virus del Fruto Rugoso Marrón del Tomate Aguas Residuales Argentina Tomatoes Plant Viruses Tomato Brown Rugose Fruit Virus Tobamovirus Crinivirus Wastewater Tobamovirus fructirugosum Crinivirus tomatichlorosis Tobamovirus fructirugosum (ToBRFV) and Crinivirus tomatichlorosis (ToCV) are emerging viral threats to tomato production worldwide, with expanding global distribution. Both viruses exhibit distinct biological characteristics and transmission mechanisms that influence their spread. This study aimed to reconstruct the complete genomes of ToBRFV and ToCV from infected tomato plants and wastewater samples in Argentina to explore their global evolutionary dynamics. Additionally, it compared the genetic diversity of ToBRFV in plant tissue and sewage samples. Using metagenomic analysis, the complete genome sequences of two ToBRFV isolates and two ToCV isolates from co-infected tomatoes, along with four ToBRFV isolates from sewage, were obtained. The analysis showed that ToBRFV exhibited higher genetic diversity in environmental samples than in plant samples. Phylodynamic analysis indicated that both viruses had a recent, single introduction in Argentina but predicted different times for ancestral diversification. The evolutionary analysis estimated that ToBRFV began its global diversification in June 2013 in Israel, with rapid diversification and exponential growth until 2020, after which the effective population size declined. Moreover, ToCV’s global expansion was characterized by exponential growth from 1979 to 2010, with Turkey identified as the most probable location with the current data available. This study highlights how sequencing and monitoring plant viruses can enhance our understanding of their global spread and impact on agriculture. EEA Bella Vista Fil: Ibañez, Julia Magalí. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bella Vista; Argentina. Fil: Zambrana Montaño, Romina Micaela. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM); Argentina Fil: Gonzalez Carreras, Pamela Stefanía. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Gonzalez Carreras, Pamela Stefanía. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Obregón, Verónica Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bella Vista; Argentina. Fil: Irazoqui, Jose Matias. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela. Instituto de Investigación de la Cadena Láctea; Argentina Fil: Irazoqui, Jose Matias. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigación de la Cadena Láctea; Argentina Fil: Vera, Pablo Alfredo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina. Fil: Vera, Pablo Alfredo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Fil: Lattar, Tatiana Elisabet. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bella Vista; Argentina. Fil: Blanco Fernandez, María D. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM); Argentina Fil: Puebla, Andrea Fabiana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina. Fil: Puebla, Andrea Fabiana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Fil: Amadio, Ariel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela. Instituto de Investigación de la Cadena Láctea; Argentina Fil: Amadio, Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigación de la Cadena Láctea; Argentina Fil: Torres, Carolina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM); Argentina Fil: Lopez Lambertini, Paola Maria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Lopez Lambertini, Paola Maria. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina 2025-04-08T11:43:28Z 2025-04-08T11:43:28Z 2025-04-05 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/21946 https://www.mdpi.com/1999-4915/17/4/533 1999-4915 https://doi.org/10.3390/v17040533 eng info:eu-repograntAgreement/INTA/2023-PEM-L01-I704, Tomato brown rugose fruit virus (ToBRFV): un virus emergente en Argentina que amenaza la producción de tomate y pimiento info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf MDPI Viruses 17 (4) : 533. (April 2025) |
| spellingShingle | Tomate Virus de las Plantas Virus del Fruto Rugoso Marrón del Tomate Aguas Residuales Argentina Tomatoes Plant Viruses Tomato Brown Rugose Fruit Virus Tobamovirus Crinivirus Wastewater Tobamovirus fructirugosum Crinivirus tomatichlorosis Ibanez, Julia Magali Zambrana Montaño, Romina Micaela Gonzalez Carreras, Pamela Stefanía Obregon, Veronica Gabriela Irazoqui, Jose Matias Vera, Pablo Alfredo Lattar, Tatiana Elisabet Blanco Fernandez, María D. Puebla, Andrea Fabiana Amadio, Ariel Torres, Carolina Lopez Lambertini, Paola Maria Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title | Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title_full | Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title_fullStr | Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title_full_unstemmed | Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title_short | Phylodynamic of Tomato Brown Rugose Fruit Virus and Tomato Chlorosis Virus, Two Emergent Viruses in Mixed Infections in Argentina |
| title_sort | phylodynamic of tomato brown rugose fruit virus and tomato chlorosis virus two emergent viruses in mixed infections in argentina |
| topic | Tomate Virus de las Plantas Virus del Fruto Rugoso Marrón del Tomate Aguas Residuales Argentina Tomatoes Plant Viruses Tomato Brown Rugose Fruit Virus Tobamovirus Crinivirus Wastewater Tobamovirus fructirugosum Crinivirus tomatichlorosis |
| url | http://hdl.handle.net/20.500.12123/21946 https://www.mdpi.com/1999-4915/17/4/533 https://doi.org/10.3390/v17040533 |
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