Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes
Quinoa (Chenopodium quinoa) is a highly nutritious crop that is resistant to adverse conditions. Due to the considerable increase in its commercial production in Andean soils, the plant is suffering the negative effects of monocropping, which reduces its yield. We used for the first time a high-thro...
| Main Authors: | , , , , , , |
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| Format: | info:eu-repo/semantics/article |
| Language: | Inglés |
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MDPI
2023
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| Online Access: | https://hdl.handle.net/20.500.12955/2249 https://doi.org/10.3390/microorganisms11081926 |
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| author | Estrada Cañari, Richard Cosme de la Cruz, Roberto Carlos Porras Valencia, Angie Tatiana Reynoso Zárate, Auristela Florencia Calderon, Constatino Arbizu Berrocal, Carlos Irvin Arone Gaspar, Gregorio Jose |
| author_browse | Arbizu Berrocal, Carlos Irvin Arone Gaspar, Gregorio Jose Calderon, Constatino Cosme de la Cruz, Roberto Carlos Estrada Cañari, Richard Porras Valencia, Angie Tatiana Reynoso Zárate, Auristela Florencia |
| author_facet | Estrada Cañari, Richard Cosme de la Cruz, Roberto Carlos Porras Valencia, Angie Tatiana Reynoso Zárate, Auristela Florencia Calderon, Constatino Arbizu Berrocal, Carlos Irvin Arone Gaspar, Gregorio Jose |
| author_sort | Estrada Cañari, Richard |
| collection | Repositorio INIA |
| description | Quinoa (Chenopodium quinoa) is a highly nutritious crop that is resistant to adverse conditions. Due to the considerable increase in its commercial production in Andean soils, the plant is suffering the negative effects of monocropping, which reduces its yield. We used for the first time a high-throughput Illumina MiSeq sequencing approach to explore the composition, diversity, and functions of fungal and bacterial communities of the bulk and rhizosphere in soils of native C. quinoa affected by monocropping in the central Andes of Peru. The results showed that the bacterial and fungal community structure among the treatments was significantly changed by the monocropping and the types of soil (rhizosphere and bulk). Also, in soils subjected to monocropping, there was an increase in Actinobacteria and a decrease in Proteobacteria, and the reduction in the presence of Ascomycota and the increase in Basidiomycota. By alpha-diversity indices, lower values of bacteria and fungi were observed in the monoculture option compared to the soil not affected by monocropping, and sometimes significant differences were found between both. We detected differentially abundant phytopathogenic fungi and bacteria with growth-stimulating effects on plants. Also, we denoted a decrease in the abundance of the functional predictions in bacteria in the monocropped soils. This research will serve as a starting point to explore the importance and effects of microorganisms in degraded soils and their impact on the growth and quality of quinoa crops. |
| format | info:eu-repo/semantics/article |
| id | INIA2249 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | INIA22492025-03-09T15:03:05Z Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes Estrada Cañari, Richard Cosme de la Cruz, Roberto Carlos Porras Valencia, Angie Tatiana Reynoso Zárate, Auristela Florencia Calderon, Constatino Arbizu Berrocal, Carlos Irvin Arone Gaspar, Gregorio Jose Microbial diversity ITS/16S sequencing Rhizosphere and bulk soil NGS https://purl.org/pe-repo/ocde/ford#4.01.06 Rhizosphere Soil microorganisms Microorganismos del suelo Monoculture Rizosfera Monocultivo Quinoa Quinua Chenopodium quinoa Quinoa (Chenopodium quinoa) is a highly nutritious crop that is resistant to adverse conditions. Due to the considerable increase in its commercial production in Andean soils, the plant is suffering the negative effects of monocropping, which reduces its yield. We used for the first time a high-throughput Illumina MiSeq sequencing approach to explore the composition, diversity, and functions of fungal and bacterial communities of the bulk and rhizosphere in soils of native C. quinoa affected by monocropping in the central Andes of Peru. The results showed that the bacterial and fungal community structure among the treatments was significantly changed by the monocropping and the types of soil (rhizosphere and bulk). Also, in soils subjected to monocropping, there was an increase in Actinobacteria and a decrease in Proteobacteria, and the reduction in the presence of Ascomycota and the increase in Basidiomycota. By alpha-diversity indices, lower values of bacteria and fungi were observed in the monoculture option compared to the soil not affected by monocropping, and sometimes significant differences were found between both. We detected differentially abundant phytopathogenic fungi and bacteria with growth-stimulating effects on plants. Also, we denoted a decrease in the abundance of the functional predictions in bacteria in the monocropped soils. This research will serve as a starting point to explore the importance and effects of microorganisms in degraded soils and their impact on the growth and quality of quinoa crops. 2023-08-11T14:41:18Z 2023-08-11T14:41:18Z 2023-07-28 info:eu-repo/semantics/article Estrada, R.; Cosme, R.; Porras, T.; Reynoso, A.; Calderon, C.; Arbizu, C.I.; & Arone, G.J. (2023). Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes. Microorganisms, 11, 1926. doi: 10.3390/ microorganisms11081926 2076-2607 https://hdl.handle.net/20.500.12955/2249 https://doi.org/10.3390/microorganisms11081926 eng urn:issn:2076-2607 Microorganisms info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ application/pdf application/pdf MDPI CH Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | Microbial diversity ITS/16S sequencing Rhizosphere and bulk soil NGS https://purl.org/pe-repo/ocde/ford#4.01.06 Rhizosphere Soil microorganisms Microorganismos del suelo Monoculture Rizosfera Monocultivo Quinoa Quinua Chenopodium quinoa Estrada Cañari, Richard Cosme de la Cruz, Roberto Carlos Porras Valencia, Angie Tatiana Reynoso Zárate, Auristela Florencia Calderon, Constatino Arbizu Berrocal, Carlos Irvin Arone Gaspar, Gregorio Jose Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title | Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title_full | Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title_fullStr | Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title_full_unstemmed | Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title_short | Changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the Peruvian Central Andes |
| title_sort | changes in bulk and rhizosphere soil microbial diversity communities of native quinoa due to the monocropping in the peruvian central andes |
| topic | Microbial diversity ITS/16S sequencing Rhizosphere and bulk soil NGS https://purl.org/pe-repo/ocde/ford#4.01.06 Rhizosphere Soil microorganisms Microorganismos del suelo Monoculture Rizosfera Monocultivo Quinoa Quinua Chenopodium quinoa |
| url | https://hdl.handle.net/20.500.12955/2249 https://doi.org/10.3390/microorganisms11081926 |
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