Genome sequence and analysis of the tuber crop potato
Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and ass...
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2011
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/67692 |
| _version_ | 1855527759212707840 |
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| author | Xu, X. Pan, P. Cheng, S. Zhang, B. Mu, D. Ni, P. Zhang, G. Yang, S. Li, R. Wang, S. Orjeda, G. Guzmán, F. Torres, M. Lozano, R. Ponce, O. Martínez, D. Cruz, G. de la Chakrabarti, S.K. Patil, V.U. Skryabin, K.G. Kuznetsov, B.B. Ravin, N.V. Kolganova, T.V. Beletsky, A.V. Mardanov, A.V. Genova, A.D. Bolser, D.M. Martin, D.M.A. Li, G. Yang, Y. Kuang, H. Hu, Q. Xiong, X. Bishop, G.J. Sagredo, B. Mejia, N. Zagorski, W. Gromadka, R. Gawor, J. Szczesny, P. Huang, S. Zhang, Z. Liang, C. He, J. Li, Y. He, Y. Xu, J. Zhang Yanyan Xie, B. Du, Y. Qu, D. Bonierbale, Merideth W. Ghislain, M. Herrera, M.R. Giuliano, G. Pietrella, M. Perrotta, G. Facella, P. O'Brien, K. Feingold, S.E. Barreiro, L.E. Massa, G.A. Diambra, L. Whitty, B.R. Vaillancourt, B. Lin, H. Massa, A.N. Geoffroy, M. Lundback, S. DellaPenna, D. Buell, R. Sharma, S.K. Marshall, D.F. Waugh, R. Bryan, Glenn J. Destefanis, M. Nagy, I. Milbourne, D. Thomson, S.J. Fiers, M. Jacobs, J.M.E. Nielsen, K.L. Sonderkaer, M. Iovene, M. Torres, G.A. Jiang, J. Veilleux, R.E. Bachem, C.W.B. Boer, J. de. Borm, T. Kloosterman, B. Eck, H. van. Datema, E. Lintel Hekkert, B. te. Goverse, A. Ham, R.C.H.J. van. Visser, Richard G.F. |
| author_browse | Bachem, C.W.B. Barreiro, L.E. Beletsky, A.V. Bishop, G.J. Boer, J. de. Bolser, D.M. Bonierbale, Merideth W. Borm, T. Bryan, Glenn J. Buell, R. Chakrabarti, S.K. Cheng, S. Cruz, G. de la Datema, E. DellaPenna, D. Destefanis, M. Diambra, L. Du, Y. Eck, H. van. Facella, P. Feingold, S.E. Fiers, M. Gawor, J. Genova, A.D. Geoffroy, M. Ghislain, M. Giuliano, G. Goverse, A. Gromadka, R. Guzmán, F. Ham, R.C.H.J. van. He, J. He, Y. Herrera, M.R. Hu, Q. Huang, S. Iovene, M. Jacobs, J.M.E. Jiang, J. Kloosterman, B. Kolganova, T.V. Kuang, H. Kuznetsov, B.B. Li, G. Li, R. Li, Y. Liang, C. Lin, H. Lintel Hekkert, B. te. Lozano, R. Lundback, S. Mardanov, A.V. Marshall, D.F. Martin, D.M.A. Martínez, D. Massa, A.N. Massa, G.A. Mejia, N. Milbourne, D. Mu, D. Nagy, I. Ni, P. Nielsen, K.L. O'Brien, K. Orjeda, G. Pan, P. Patil, V.U. Perrotta, G. Pietrella, M. Ponce, O. Qu, D. Ravin, N.V. Sagredo, B. Sharma, S.K. Skryabin, K.G. Sonderkaer, M. Szczesny, P. Thomson, S.J. Torres, G.A. Torres, M. Vaillancourt, B. Veilleux, R.E. Visser, Richard G.F. Wang, S. Waugh, R. Whitty, B.R. Xie, B. Xiong, X. Xu, J. Xu, X. Yang, S. Yang, Y. Zagorski, W. Zhang Yanyan Zhang, B. Zhang, G. Zhang, Z. |
| author_facet | Xu, X. Pan, P. Cheng, S. Zhang, B. Mu, D. Ni, P. Zhang, G. Yang, S. Li, R. Wang, S. Orjeda, G. Guzmán, F. Torres, M. Lozano, R. Ponce, O. Martínez, D. Cruz, G. de la Chakrabarti, S.K. Patil, V.U. Skryabin, K.G. Kuznetsov, B.B. Ravin, N.V. Kolganova, T.V. Beletsky, A.V. Mardanov, A.V. Genova, A.D. Bolser, D.M. Martin, D.M.A. Li, G. Yang, Y. Kuang, H. Hu, Q. Xiong, X. Bishop, G.J. Sagredo, B. Mejia, N. Zagorski, W. Gromadka, R. Gawor, J. Szczesny, P. Huang, S. Zhang, Z. Liang, C. He, J. Li, Y. He, Y. Xu, J. Zhang Yanyan Xie, B. Du, Y. Qu, D. Bonierbale, Merideth W. Ghislain, M. Herrera, M.R. Giuliano, G. Pietrella, M. Perrotta, G. Facella, P. O'Brien, K. Feingold, S.E. Barreiro, L.E. Massa, G.A. Diambra, L. Whitty, B.R. Vaillancourt, B. Lin, H. Massa, A.N. Geoffroy, M. Lundback, S. DellaPenna, D. Buell, R. Sharma, S.K. Marshall, D.F. Waugh, R. Bryan, Glenn J. Destefanis, M. Nagy, I. Milbourne, D. Thomson, S.J. Fiers, M. Jacobs, J.M.E. Nielsen, K.L. Sonderkaer, M. Iovene, M. Torres, G.A. Jiang, J. Veilleux, R.E. Bachem, C.W.B. Boer, J. de. Borm, T. Kloosterman, B. Eck, H. van. Datema, E. Lintel Hekkert, B. te. Goverse, A. Ham, R.C.H.J. van. Visser, Richard G.F. |
| author_sort | Xu, X. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop. The genome of the potato (Solanum tuberosum L.), a staple crop vital to food security, has been sequenced. The Potato Genome Sequencing Consortium sequenced a homozygous doubled-monoploid potato clone as well as a heterozygous diploid clone. Genome analysis reveals traces of at least two genome duplication events and genes specific to Asterids, a large clade of flowering plants of which the potato is the first to be sequenced. Gene presence/absence variants and other potentially deleterious mutations are frequent and may be the cause of inbreeding depression. The genome sequence will facilitate genetic improvements in the potato with a view to improving yield and to increasing disease and stress resistance of this crop, which is a now a significant component of worldwide food production and is becoming increasingly important in the developing world. |
| format | Journal Article |
| id | CGSpace67692 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2011 |
| publishDateRange | 2011 |
| publishDateSort | 2011 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace676922025-11-06T14:06:09Z Genome sequence and analysis of the tuber crop potato Xu, X. Pan, P. Cheng, S. Zhang, B. Mu, D. Ni, P. Zhang, G. Yang, S. Li, R. Wang, S. Orjeda, G. Guzmán, F. Torres, M. Lozano, R. Ponce, O. Martínez, D. Cruz, G. de la Chakrabarti, S.K. Patil, V.U. Skryabin, K.G. Kuznetsov, B.B. Ravin, N.V. Kolganova, T.V. Beletsky, A.V. Mardanov, A.V. Genova, A.D. Bolser, D.M. Martin, D.M.A. Li, G. Yang, Y. Kuang, H. Hu, Q. Xiong, X. Bishop, G.J. Sagredo, B. Mejia, N. Zagorski, W. Gromadka, R. Gawor, J. Szczesny, P. Huang, S. Zhang, Z. Liang, C. He, J. Li, Y. He, Y. Xu, J. Zhang Yanyan Xie, B. Du, Y. Qu, D. Bonierbale, Merideth W. Ghislain, M. Herrera, M.R. Giuliano, G. Pietrella, M. Perrotta, G. Facella, P. O'Brien, K. Feingold, S.E. Barreiro, L.E. Massa, G.A. Diambra, L. Whitty, B.R. Vaillancourt, B. Lin, H. Massa, A.N. Geoffroy, M. Lundback, S. DellaPenna, D. Buell, R. Sharma, S.K. Marshall, D.F. Waugh, R. Bryan, Glenn J. Destefanis, M. Nagy, I. Milbourne, D. Thomson, S.J. Fiers, M. Jacobs, J.M.E. Nielsen, K.L. Sonderkaer, M. Iovene, M. Torres, G.A. Jiang, J. Veilleux, R.E. Bachem, C.W.B. Boer, J. de. Borm, T. Kloosterman, B. Eck, H. van. Datema, E. Lintel Hekkert, B. te. Goverse, A. Ham, R.C.H.J. van. Visser, Richard G.F. potatoes gene mapping genomics heterozygotes inbreeding disease resistance plant breeding plant genetics Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop. The genome of the potato (Solanum tuberosum L.), a staple crop vital to food security, has been sequenced. The Potato Genome Sequencing Consortium sequenced a homozygous doubled-monoploid potato clone as well as a heterozygous diploid clone. Genome analysis reveals traces of at least two genome duplication events and genes specific to Asterids, a large clade of flowering plants of which the potato is the first to be sequenced. Gene presence/absence variants and other potentially deleterious mutations are frequent and may be the cause of inbreeding depression. The genome sequence will facilitate genetic improvements in the potato with a view to improving yield and to increasing disease and stress resistance of this crop, which is a now a significant component of worldwide food production and is becoming increasingly important in the developing world. 2011-07 2015-07-30T06:21:05Z 2015-07-30T06:21:05Z Journal Article https://hdl.handle.net/10568/67692 en Open Access application/pdf Springer Xu, X.; Pan, P.; Cheng, S.; Zhang, B.; Mu, D.; Ni, P.; Zhang, G.; Yang, S.; Li, R.; Wang, J.; Orjeda, G.; Guzman, F.; Torres, M.; Lozano, R.; Ponce, O.; Martinez, D.; Cruz, G. de la.; Chakrabarti, S.K.; Patil, V.U.; Skryabin, K.G.; Kuznetsov, B.B.; Ravin, N.V.; Kolganova, T.V.; Beletsky, A.V.; Mardanov, A.V.; Genova, A.D.; Bolser, D.M.; Martin, D.M.A.; Li, G.; Yang, Y.; Kuang, H.; Hu, Q.; Xiong, X.; Bishop, G.J.; Sagredo, B.; Mejia, N.; Zagorski, W.; Gromadka, R.; Gawor, J.; Szczesny, P.; Huang, S.; Zhang, Z.; Liang, C.; He, J.; Li, Y.; He, Y.; Xu, J.; Zhang, Y.; Xie, B.; Du, Y.; Qu, D.; Bonierbale, M.; Ghislain, M.; Herrera, M.R.; Giuliano, G.; Pietrella, M.; Perrotta, G.; Facella, P.; OﾒBrien, K; Feingold, S.E.; Barreiro, L.E.; Massa, G.A.; Diambra, L.; Whitty, B.R.; Vaillancourt, B.; Lin, H.; Massa, A.N.; Geoffroy, M.; Lundback, S.; DellaPenna, D.; Buell, R.; Sharma, S.K.; Marshall, D.F.; Waugh, R.; Bryan, G.J.; Destefanis, M.; Nagy, I.; Milbourne, D.; Thomson, S.J.; Fiers, M.; Jacobs, J.M.E.; Nielsen, K.L.; Sonderkaer, M.; Iovene, M.; Torres, G.A.; Jiang, J.; Veilleux, R.E.; Bachem, C.W.B.; Boer, J. de.; Borm, T.; Kloosterman, B.; Eck, H. van.; Datema, E.; Lintel Hekkert, B. te.; Goverse, A.; Ham, R.C.H.J. van.; Visser, R.G.F. 2011. Genome sequence and analysis of the tuber crop potato. Nature. (USA). ISSN 0028-0836. 475(7355):189-195. |
| spellingShingle | potatoes gene mapping genomics heterozygotes inbreeding disease resistance plant breeding plant genetics Xu, X. Pan, P. Cheng, S. Zhang, B. Mu, D. Ni, P. Zhang, G. Yang, S. Li, R. Wang, S. Orjeda, G. Guzmán, F. Torres, M. Lozano, R. Ponce, O. Martínez, D. Cruz, G. de la Chakrabarti, S.K. Patil, V.U. Skryabin, K.G. Kuznetsov, B.B. Ravin, N.V. Kolganova, T.V. Beletsky, A.V. Mardanov, A.V. Genova, A.D. Bolser, D.M. Martin, D.M.A. Li, G. Yang, Y. Kuang, H. Hu, Q. Xiong, X. Bishop, G.J. Sagredo, B. Mejia, N. Zagorski, W. Gromadka, R. Gawor, J. Szczesny, P. Huang, S. Zhang, Z. Liang, C. He, J. Li, Y. He, Y. Xu, J. Zhang Yanyan Xie, B. Du, Y. Qu, D. Bonierbale, Merideth W. Ghislain, M. Herrera, M.R. Giuliano, G. Pietrella, M. Perrotta, G. Facella, P. O'Brien, K. Feingold, S.E. Barreiro, L.E. Massa, G.A. Diambra, L. Whitty, B.R. Vaillancourt, B. Lin, H. Massa, A.N. Geoffroy, M. Lundback, S. DellaPenna, D. Buell, R. Sharma, S.K. Marshall, D.F. Waugh, R. Bryan, Glenn J. Destefanis, M. Nagy, I. Milbourne, D. Thomson, S.J. Fiers, M. Jacobs, J.M.E. Nielsen, K.L. Sonderkaer, M. Iovene, M. Torres, G.A. Jiang, J. Veilleux, R.E. Bachem, C.W.B. Boer, J. de. Borm, T. Kloosterman, B. Eck, H. van. Datema, E. Lintel Hekkert, B. te. Goverse, A. Ham, R.C.H.J. van. Visser, Richard G.F. Genome sequence and analysis of the tuber crop potato |
| title | Genome sequence and analysis of the tuber crop potato |
| title_full | Genome sequence and analysis of the tuber crop potato |
| title_fullStr | Genome sequence and analysis of the tuber crop potato |
| title_full_unstemmed | Genome sequence and analysis of the tuber crop potato |
| title_short | Genome sequence and analysis of the tuber crop potato |
| title_sort | genome sequence and analysis of the tuber crop potato |
| topic | potatoes gene mapping genomics heterozygotes inbreeding disease resistance plant breeding plant genetics |
| url | https://hdl.handle.net/10568/67692 |
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