AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data
Currently AquaPath features three identification tools that cover (1) major sequence type of piscine Group B Streptococcus (GBS), (2) most serotype of GBS and (3) major biotype of Yersinia ruckeri. AquaPath is still under development and more tools will be developed to cover additional bacterial spe...
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| Formato: | Informe técnico |
| Lenguaje: | Inglés |
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2021
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| Acceso en línea: | https://hdl.handle.net/10568/122962 |
| _version_ | 1855537552912547840 |
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| author | CGIAR Platform for Big Data in Agriculture |
| author_browse | CGIAR Platform for Big Data in Agriculture |
| author_facet | CGIAR Platform for Big Data in Agriculture |
| author_sort | CGIAR Platform for Big Data in Agriculture |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Currently AquaPath features three identification tools that cover (1) major sequence type of piscine Group B Streptococcus (GBS), (2) most serotype of GBS and (3) major biotype of Yersinia ruckeri. AquaPath is still under development and more tools will be developed to cover additional bacterial species. https://worldfishcenter.github.io/rappseq/identify/ |
| format | Informe técnico |
| id | CGSpace122962 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| record_format | dspace |
| spelling | CGSpace1229622023-03-14T12:20:27Z AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data CGIAR Platform for Big Data in Agriculture development rural development data identification pathogens species aquaculture systems tools agrifood systems biotype streptococcus Currently AquaPath features three identification tools that cover (1) major sequence type of piscine Group B Streptococcus (GBS), (2) most serotype of GBS and (3) major biotype of Yersinia ruckeri. AquaPath is still under development and more tools will be developed to cover additional bacterial species. https://worldfishcenter.github.io/rappseq/identify/ 2021-12-31 2022-10-06T14:15:00Z 2022-10-06T14:15:00Z Report https://hdl.handle.net/10568/122962 en Open Access application/pdf CGIAR Platform for Big Data in Agriculture. 2021. AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data. Reported in Platform for Big Data in Agriculture Annual Report 2021. Innovations. |
| spellingShingle | development rural development data identification pathogens species aquaculture systems tools agrifood systems biotype streptococcus CGIAR Platform for Big Data in Agriculture AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title | AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title_full | AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title_fullStr | AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title_full_unstemmed | AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title_short | AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data |
| title_sort | aquapath a web based user interface for rapid identification of aquaculture pathogens based on long read dna sequence data |
| topic | development rural development data identification pathogens species aquaculture systems tools agrifood systems biotype streptococcus |
| url | https://hdl.handle.net/10568/122962 |
| work_keys_str_mv | AT cgiarplatformforbigdatainagriculture aquapathawebbaseduserinterfaceforrapididentificationofaquaculturepathogensbasedonlongreaddnasequencedata |