Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity
Though facing significant challenges, coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide several ecosystem services. However, little is known about their genetic diversity and the variety mixtures used. In light of this, there is...
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University of Jeddah
2024
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| Online Access: | https://repositorio.catie.ac.cr/handle/11554/12657 |
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RepoCATIE126572024-07-01T03:34:47Z Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity Millet, Claude Patrick. Solano Sánchez, William Alliane, Clementine Tram Vi Marraccini, Pierre Sostenibilidad||sustainability||sustentabilidade||durabilité Cambio climático||climate change||mudança de clima||changement climatique Productividad||productivity||produtividade||productivité Diversidad genética (como recurso)||genetic diversity (as resource)||diversidade genética (como recurso)||diversité génétique (comme ressource) Agroindustria||agro-industry||agroindústria||agro-industrie Diversificación||diversification||diversificação||diversification Sede Central ODS 8 - Trabajo decente y crecimiento económico ODS 9 - Industria, innovación e infraestructura ODS 12 - Producción y consumo responsables ODS 17 - Alianzas para lograr los objetivos Though facing significant challenges, coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide several ecosystem services. However, little is known about their genetic diversity and the variety mixtures used. In light of this, there is a need to characterize Haitian coffee diversity to help inform revitalization of this sector. We sampled 28 diverse farms in historically important coffee growing regions of northern and southern Haiti. We performed KASP-genotyping of SNP markers and HiPlex multiplex amplicon sequencing for haplotype calling on our samples, as well as several Ethiopian and commercial accessions from international collections. This allowed us to assign Haitian samples to varietal groups. Our analyses revealed considerable genetic diversity in Haitian farms, higher in fact than many farmers realized. Notably, genetic structure analyses revealed the presence of clusters related to Typica, Bourbon, and Catimor groups, another group that was not represented in our reference accession panel, and several admixed individuals. Across the study areas, we found both mixed-variety farms and monovarietal farms with the historical and traditional Typica variety. This study is, to our knowledge, the first to genetically characterize Haitian C. arabica variety mixtures, and report the limited cultivation of C. canephora (Robusta coffee) in the study area. Our results show that some coffee farms are repositories of historical, widely-abandoned varieties while others are generators of new diversity through genetic mixing. 2024-06-28T20:16:11Z 2024-06-28T20:16:11Z 2024-04-16 Artículo https://repositorio.catie.ac.cr/handle/11554/12657 openAccess en Plos One https://doi. org/10.1371/journal.pone.0299493 24 paginas application/pdf University of Jeddah |
| institution |
Centro Agronómico Tropical de Investigación y Enseñanza |
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Repositorio CATIE |
| language |
Inglés |
| topic |
Sostenibilidad||sustainability||sustentabilidade||durabilité Cambio climático||climate change||mudança de clima||changement climatique Productividad||productivity||produtividade||productivité Diversidad genética (como recurso)||genetic diversity (as resource)||diversidade genética (como recurso)||diversité génétique (comme ressource) Agroindustria||agro-industry||agroindústria||agro-industrie Diversificación||diversification||diversificação||diversification Sede Central ODS 8 - Trabajo decente y crecimiento económico ODS 9 - Industria, innovación e infraestructura ODS 12 - Producción y consumo responsables ODS 17 - Alianzas para lograr los objetivos |
| spellingShingle |
Sostenibilidad||sustainability||sustentabilidade||durabilité Cambio climático||climate change||mudança de clima||changement climatique Productividad||productivity||produtividade||productivité Diversidad genética (como recurso)||genetic diversity (as resource)||diversidade genética (como recurso)||diversité génétique (comme ressource) Agroindustria||agro-industry||agroindústria||agro-industrie Diversificación||diversification||diversificação||diversification Sede Central ODS 8 - Trabajo decente y crecimiento económico ODS 9 - Industria, innovación e infraestructura ODS 12 - Producción y consumo responsables ODS 17 - Alianzas para lograr los objetivos Millet, Claude Patrick. Solano Sánchez, William Alliane, Clementine Tram Vi Marraccini, Pierre Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| description |
Though facing significant challenges, coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide several ecosystem services. However, little is known about their genetic diversity and the variety mixtures used. In light of this, there is a need to characterize Haitian coffee diversity to help inform revitalization of this sector. We sampled 28 diverse farms in historically important coffee growing regions of northern and southern Haiti. We performed KASP-genotyping of SNP markers and HiPlex multiplex amplicon sequencing for haplotype calling on our samples, as well as several Ethiopian and commercial accessions from international collections. This allowed us to assign Haitian samples to varietal groups. Our analyses revealed considerable genetic diversity in Haitian farms, higher in fact than many farmers realized. Notably, genetic structure analyses revealed the presence of clusters related to Typica, Bourbon, and Catimor groups, another group that was not represented in our reference accession panel, and several admixed individuals. Across the study areas, we found both mixed-variety farms and monovarietal farms with the historical and traditional Typica variety. This study is, to our knowledge, the first to genetically characterize Haitian C. arabica variety mixtures, and report the limited cultivation of C. canephora (Robusta coffee) in the study area. Our results show that some coffee farms are repositories of historical, widely-abandoned varieties while others are generators of new diversity through genetic mixing. |
| format |
Artículo |
| author |
Millet, Claude Patrick. Solano Sánchez, William Alliane, Clementine Tram Vi Marraccini, Pierre |
| author_facet |
Millet, Claude Patrick. Solano Sánchez, William Alliane, Clementine Tram Vi Marraccini, Pierre |
| author_sort |
Millet, Claude Patrick. |
| title |
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| title_short |
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| title_full |
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| title_fullStr |
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| title_full_unstemmed |
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| title_sort |
haitian coffee agroforestry systems harbor complex arabica variety mixtures and under recognized genetic diversity |
| publisher |
University of Jeddah |
| publishDate |
2024 |
| url |
https://repositorio.catie.ac.cr/handle/11554/12657 |
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