Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia
Vanilla is an economically important crop for low-lying humid tropical regions, but cultivated plants face serious phytosanitary problems. Fusarium wilt is a devastating disease affecting vanilla crops, caused by the fungal pathogens Fusarium oxysporum f. sp. vanillae (Fov) and F. oxysporumf. sp. ra...
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| Formato: | article |
| Lenguaje: | Inglés |
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John Wiley and Sons Inc
2025
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| Acceso en línea: | https://enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/1758-2229.70038 http://hdl.handle.net/20.500.12324/41186 https://doi.org/10.1111/1758-2229.70038 |
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| author | Rodríguez Bastidas, Jayerlin Manrique Barros, Santiago Riascos Ortiz, Donald Mosquera Espinosa, Ana T S Flanagan, Nicola |
| author_browse | Manrique Barros, Santiago Mosquera Espinosa, Ana T Riascos Ortiz, Donald Rodríguez Bastidas, Jayerlin S Flanagan, Nicola |
| author_facet | Rodríguez Bastidas, Jayerlin Manrique Barros, Santiago Riascos Ortiz, Donald Mosquera Espinosa, Ana T S Flanagan, Nicola |
| author_sort | Rodríguez Bastidas, Jayerlin |
| collection | Repositorio AGROSAVIA |
| description | Vanilla is an economically important crop for low-lying humid tropical regions, but cultivated plants face serious phytosanitary problems. Fusarium wilt is a devastating disease affecting vanilla crops, caused by the fungal pathogens Fusarium oxysporum f. sp. vanillae (Fov) and F. oxysporumf. sp. radicis-vanillae (Forv), part of the F. oxysporum species complex(FOSC). We characterized 29 fungal isolates from a vanilla crop and crop wild relatives (CWR) using molecular (EF1-α and ITS-rRNA loci) and morphological traits. Fusarium was the predominant genus, followed by Colleto-trichum and Clonostachys. Four Fusarium species were identified:F. oxysporum (37.9%), Fusarium solani (20.7%), Fusarium pseudocircina-tum (13.8%) and Fusarium concentricum (10.3%). The latter three species were isolated only from CWR and may represent latent pathogens. Fov was isolated from both the crop and CWR, while a Forv-affiliated isolate was also found in a vanilla crop, marking the first report in the neotropical region. TheEF1-α locus provided greater genotype resolution, as well as having refer-ence sequences for Forv. However, the fungal barcode ITS locus is widely applied. We recommend the continued use of both loci for Fusarium diagno-sis in vanilla to facilitate early detection and the development of effective integrated crop management strategies. |
| format | article |
| id | RepoAGROSAVIA41186 |
| institution | Corporación Colombiana de Investigación Agropecuaria |
| language | Inglés |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| publisher | John Wiley and Sons Inc |
| publisherStr | John Wiley and Sons Inc |
| record_format | dspace |
| spelling | RepoAGROSAVIA411862025-09-06T03:00:49Z Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia Rodríguez Bastidas, Jayerlin Manrique Barros, Santiago Riascos Ortiz, Donald Mosquera Espinosa, Ana T S Flanagan, Nicola Cultivo - F01 Fusarium Vainilla Cultivo Comercialización Hortalizas y plantas aromáticas http://aims.fao.org/aos/agrovoc/c_3156 http://aims.fao.org/aos/agrovoc/c_15126 http://aims.fao.org/aos/agrovoc/c_1972 http://aims.fao.org/aos/agrovoc/c_21547 Vanilla is an economically important crop for low-lying humid tropical regions, but cultivated plants face serious phytosanitary problems. Fusarium wilt is a devastating disease affecting vanilla crops, caused by the fungal pathogens Fusarium oxysporum f. sp. vanillae (Fov) and F. oxysporumf. sp. radicis-vanillae (Forv), part of the F. oxysporum species complex(FOSC). We characterized 29 fungal isolates from a vanilla crop and crop wild relatives (CWR) using molecular (EF1-α and ITS-rRNA loci) and morphological traits. Fusarium was the predominant genus, followed by Colleto-trichum and Clonostachys. Four Fusarium species were identified:F. oxysporum (37.9%), Fusarium solani (20.7%), Fusarium pseudocircina-tum (13.8%) and Fusarium concentricum (10.3%). The latter three species were isolated only from CWR and may represent latent pathogens. Fov was isolated from both the crop and CWR, while a Forv-affiliated isolate was also found in a vanilla crop, marking the first report in the neotropical region. TheEF1-α locus provided greater genotype resolution, as well as having refer-ence sequences for Forv. However, the fungal barcode ITS locus is widely applied. We recommend the continued use of both loci for Fusarium diagno-sis in vanilla to facilitate early detection and the development of effective integrated crop management strategies. 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Available from: https://doi.org/10.3390/jof8111161 Atribución-NoComercial-CompartirIgual 4.0 Internacional http://creativecommons.org/licenses/by-nc-sa/4.0/ application/pdf application/pdf C.I Tibaitatá Colombia John Wiley and Sons Inc Estados Unidos Environmental Microbiology Reports; Vol. 16, Núm.6 (2024): Environmental Microbiology Reports (Noviembre). |
| spellingShingle | Cultivo - F01 Fusarium Vainilla Cultivo Comercialización Hortalizas y plantas aromáticas http://aims.fao.org/aos/agrovoc/c_3156 http://aims.fao.org/aos/agrovoc/c_15126 http://aims.fao.org/aos/agrovoc/c_1972 http://aims.fao.org/aos/agrovoc/c_21547 Rodríguez Bastidas, Jayerlin Manrique Barros, Santiago Riascos Ortiz, Donald Mosquera Espinosa, Ana T S Flanagan, Nicola Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title | Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title_full | Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title_fullStr | Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title_full_unstemmed | Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title_short | Molecular identification of Fusarium species in commercial vanilla and crop wild relatives in Colombia |
| title_sort | molecular identification of fusarium species in commercial vanilla and crop wild relatives in colombia |
| topic | Cultivo - F01 Fusarium Vainilla Cultivo Comercialización Hortalizas y plantas aromáticas http://aims.fao.org/aos/agrovoc/c_3156 http://aims.fao.org/aos/agrovoc/c_15126 http://aims.fao.org/aos/agrovoc/c_1972 http://aims.fao.org/aos/agrovoc/c_21547 |
| url | https://enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/1758-2229.70038 http://hdl.handle.net/20.500.12324/41186 https://doi.org/10.1111/1758-2229.70038 |
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