Revisiting Biodiversity of Crop Genepools

Crop diversity has typically served as a source of novel variants for breeding programs, focusing on yield, quality and nutrition [1]. More recently, it has also assisted addressing basic questions in the field of genetics such as the repeatability of the domestication process [2-4], and the nature...

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Autor principal:	Cortes Vera, Andres Javier
Formato:	article
Lenguaje:	Inglés
Publicado:	Skeena Publishers 2024
Materias:	Cultivo - F01 Cultivo Diversificación Genética Transversal http://aims.fao.org/aos/agrovoc/c_2018 http://aims.fao.org/aos/agrovoc/c_2344 http://aims.fao.org/aos/agrovoc/c_3222
Acceso en línea:	https://skeenapublishers.com/journal/ijares/IJARES-02-00009.pdf http://hdl.handle.net/20.500.12324/38993

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institution	Corporación Colombiana de Investigación Agropecuaria
collection	Repositorio AGROSAVIA
language	Inglés
topic	Cultivo - F01 Cultivo Diversificación Genética Transversal http://aims.fao.org/aos/agrovoc/c_2018 http://aims.fao.org/aos/agrovoc/c_2344 http://aims.fao.org/aos/agrovoc/c_3222
spellingShingle	Cultivo - F01 Cultivo Diversificación Genética Transversal http://aims.fao.org/aos/agrovoc/c_2018 http://aims.fao.org/aos/agrovoc/c_2344 http://aims.fao.org/aos/agrovoc/c_3222 Cortes Vera, Andres Javier Revisiting Biodiversity of Crop Genepools
description	Crop diversity has typically served as a source of novel variants for breeding programs, focusing on yield, quality and nutrition [1]. More recently, it has also assisted addressing basic questions in the field of genetics such as the repeatability of the domestication process [2-4], and the nature of the migration-selection balance in the face of mutation [5-8] and recombination rate variation [9]. Meanwhile, going beyond crop diversity and exploring crop wild relatives is equally promising, specially in the face of adaptation to current climate change [10]. Wild accessions offer an expanded genepool in terms of phenotypic innovation [11] and genetic diversity [12]. For instance, the wild is likely to exhibit pre-adapted variants advantageous to polygenic adaptation [13], such as drought [14-18] and heat [19,20] tolerance. However, merging crop and wild genepools remains challenging from a technical point of view due to phenological and genetic incompatibilities, sometimes bridged via recurrent backcrossing schemes, not to mention the adoption gaps when handling wild materials and early landraces with the potential to serve as novel crops [21]. Hence, leveraging novel approaches [10,19,22] are urgently required to better couple agro- and bio-diversity, both in current hotspots as well as in evolutionary cradles [23]. Of particular interest are the tropical regions [24,25], which not only maintain unparsed diversity [26] but are also the most vulnerable in terms of climate change [27] and crops’ market volatility.
format	article
author	Cortes Vera, Andres Javier
author_facet	Cortes Vera, Andres Javier
author_sort	Cortes Vera, Andres Javier
title	Revisiting Biodiversity of Crop Genepools
title_short	Revisiting Biodiversity of Crop Genepools
title_full	Revisiting Biodiversity of Crop Genepools
title_fullStr	Revisiting Biodiversity of Crop Genepools
title_full_unstemmed	Revisiting Biodiversity of Crop Genepools
title_sort	revisiting biodiversity of crop genepools
publisher	Skeena Publishers
publishDate	2024
url	https://skeenapublishers.com/journal/ijares/IJARES-02-00009.pdf http://hdl.handle.net/20.500.12324/38993
work_keys_str_mv	AT cortesveraandresjavier revisitingbiodiversityofcropgenepools
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spelling	RepoAGROSAVIA389932024-03-07T03:00:59Z Revisiting Biodiversity of Crop Genepools Cortes Vera, Andres Javier Cultivo - F01 Cultivo Diversificación Genética Transversal http://aims.fao.org/aos/agrovoc/c_2018 http://aims.fao.org/aos/agrovoc/c_2344 http://aims.fao.org/aos/agrovoc/c_3222 Crop diversity has typically served as a source of novel variants for breeding programs, focusing on yield, quality and nutrition [1]. More recently, it has also assisted addressing basic questions in the field of genetics such as the repeatability of the domestication process [2-4], and the nature of the migration-selection balance in the face of mutation [5-8] and recombination rate variation [9]. Meanwhile, going beyond crop diversity and exploring crop wild relatives is equally promising, specially in the face of adaptation to current climate change [10]. Wild accessions offer an expanded genepool in terms of phenotypic innovation [11] and genetic diversity [12]. For instance, the wild is likely to exhibit pre-adapted variants advantageous to polygenic adaptation [13], such as drought [14-18] and heat [19,20] tolerance. However, merging crop and wild genepools remains challenging from a technical point of view due to phenological and genetic incompatibilities, sometimes bridged via recurrent backcrossing schemes, not to mention the adoption gaps when handling wild materials and early landraces with the potential to serve as novel crops [21]. Hence, leveraging novel approaches [10,19,22] are urgently required to better couple agro- and bio-diversity, both in current hotspots as well as in evolutionary cradles [23]. Of particular interest are the tropical regions [24,25], which not only maintain unparsed diversity [26] but are also the most vulnerable in terms of climate change [27] and crops’ market volatility. 2024-03-06T22:11:23Z 2024-03-06T22:11:23Z 2021-05-19 2021 article Artículo científico http://purl.org/coar/resource_type/c_2df8fbb1 info:eu-repo/semantics/article https://purl.org/redcol/resource_type/ART http://purl.org/coar/version/c_970fb48d4fbd8a85 https://skeenapublishers.com/journal/ijares/IJARES-02-00009.pdf 2769-7746 http://hdl.handle.net/20.500.12324/38993 reponame:Biblioteca Digital Agropecuaria de Colombia instname:Corporación colombiana de investigación agropecuaria AGROSAVIA eng International Journal on Agriculture Research and Environmental Sciences 2 1 25 26 Wu X, A S M Faridul Islam, Naransa Limpot, Lucas Mackasmiel, Jerzy Mierzwa, et al. (2020) Genome Wide SNP Identification and Association Mapping for Seed Mineral Concentration in Mung Bean (Vigna radiata L). Front Genet 11: 656. Cortés AJ, Paola Skeen, Matthew W Blair, María I Chacón-Sánchez (2018) Does the genomic landscape of species divergence in Phaseolus beans coerce parallel signatures of adaptation and domestication? Front Plant Sci 9: 1816 Cortés AJ (2013) On the Origin of the Common Bean (Phaseolus vulgaris L). American Journal of Plant Sciences 4(10): 1998-2000. Blair MW, Andrés J Cortés, R Varma Penmetsa, Andrew Farmer, Noelia Carrasquilla-Garcia, et al. (2013) A high throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L). Theor Appl Genet 126(2): 535-548 Galeano CH, Andrés J Cortés, Andrea C Fernández, Álvaro Soler, Natalia Franco-Herrera, et al. (2012) Gene-Based Single Nucleotide Polymorphism Markers for Genetic and Association Mapping in Common Bean. BMC Genetics 13(1): 48. Cortés A J, M C Chavarro, M W Blair (2011) SNP marker diversity in common bean (Phaseolus vulgaris L). Theor Appl Genet 123(5): 827- 845. Blair MW, Andrés J Cortés, Andrew D Farmer, Wei Huang, Daniel Ambachew, et al. (2018) Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L). PLoS One 13(3): e0189597. Cortés A J, Fredy A Monserrate, Julián Ramírez-Villegas, Santiago Madriñán, Matthew W Blair (2013) Drought Tolerance in Wild Plant Populations: the Case of Common Beans (Phaseolus vulgaris L.). Plos One 8(5): e62898 Schmutz J, Phillip E McClean, Sujan Mamidi, G Albert Wu, Steven B Cannon, et al. (2014) A reference genome for common bean and genome wide analysis of dual domestications. Nat Genet 46(7): 707- 713. Cortés A J, M Restrepo Montoya, L E Bedoya Canas (2020) Modern Strategies to Assess and Breed Forest Tree Adaptation to Changing Climate. Front Plant Sci 11: 583323. Blair M W, A Soler, A J Cortés (2012) Diversification and Population Structure in Common Beans (Phaseolus vulgaris L) Plos One 7(11): e49488. Arenas S (2021) Evaluating the accuracy of genomic prediction for the management and conservation of relictual natural tree populations. Tree Genetics & Genomes 17(12) Buitrago Bitar MA, Andrés J Cortés, Felipe López-Hernández, Jorge M Londoño-Caicedo, Jaime E Muñoz-Florez, et al. (2021) Allelic Diversity at Abiotic Stress Responsive Genes in Relationship to Ecological Drought Indices for Cultivated Tepary Bean Phaseolus acutifolius A Gray and Its Wild Relatives. Genes 12(4): 556. Cortés AJ, M W Blair (2018) Genotyping by Sequencing and Genome – Environment Associations in Wild Common Bean Predict Widespread Divergent Adaptation to Drought. Front Plant Sci 9: 128. Blair MW, A J Cortés, D This (2016) Identification of an ERECTA gene and its drought adaptation associations with wild and cultivated common bean. Plant Science 242: 250-259 Cortés AJ, M Carolina Chavarro, Santiago Madriñán, Dominique This, Matthew W Blair (2012) Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L). BMC Genet 13: 58. Cortés AJ, Dominique This, Carolina Chavarro, Santiago Madriñán, Matthew W Blair (2012) Nucleotide diversity patterns at the drought related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L). Theor Appl Genet 125(5): 1069-1085. Cortés A J, F López Hernández, D Osorio Rodriguez (2020) Predicting thermal adaptation by looking into populations genomic past. Front Genet 11: 564515. López Hernández F, A J Cortés (2019) Last Generation Genome– Environment Associations Reveal the Genetic Basis of Heat Tolerance in Common Bean (Phaseolus vulgaris L). Front Genet 10: 954. Gulisano A, Sofia Alves, João Neves Martins, Luisa M Trindade (2019) Genetics and Breeding of Lupinus mutabilis: An Emerging Protein Crop. Front Plant Sci 10: 1385. Cortés A J, F López Hernández (2021) Harnessing Crop Wild Diversity for Climate Change Adaptation. Genes 12. Pironon S, James S. Borrell, Ian Ondo, Ruben Douglas, Charlotte Phillips, et al. (2020) Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity. Plants 9(9): 1128 Domesticated Biodiversity. Plants 9(9): 1128. 24. Cortés AJ, Luz N Garzón, Jhon B Valencia, Santiago Madriñán (2018) On the Causes of Rapid Diversification in the Páramos: Isolation by Ecology and Genomic Divergence in Espeletia. Front Plant Sci 9: 1700. Madriñán S, AJ Cortés, J E Richardson (2013) Páramo is the world’s fastest evolving and coolest biodiversity hotspot. Front Genet 4: 192. Reyes Herrera PH, Laura Muñoz-Baena, Valeria Velásquez-Zapata, Laura Patiño, Oscar A Delgado-Paz, et al. (2020) Inheritance of Rootstock Effects in Avocado (Persea americana Mill) cv Hass. Front Plant Sci 11: 555071. Valencia JB, Jeison M, Juan GL, Santiago M, Andres JC (2020) Climate Vulnerability Assessment of the Espeletia Complex on Páramo Sky Islands in the Northern Andes. Front Ecol Evol 8: 565708. McCouch S, Gregory J Baute, James Bradeen, Paula Bramel, Peter K Bretting, et al. (2013) Agriculture: Feeding the future. Nature 499(7456): 23-24 Spindel JE, SR McCouch (2016) When more is better: how data sharing would accelerate genomic selection of crop plants New Phytol 212: 814-826 McCouch S, Zahra Katy Navabi, Michael Abberton, Noelle L Anglin, Rosa Lia Barbieri, et al. (2020) Mobilizing Crop Biodiversity. Mol PLant 13(10): 1341-1344 Attribution-ShareAlike 4.0 International http://creativecommons.org/licenses/by-sa/4.0/ application/pdf application/pdf Colombia Skeena Publishers Bogotá (Colombia) International Journal on Agriculture Research and Environmental Sciences; Vol. 2, Núm. 1(2021):International Journal on Agriculture Research and Environmental Sciences (Mayo);p. 25 -26.

Revisiting Biodiversity of Crop Genepools

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