Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco
Erwinia amylovora causes economic losses that affect pear and apple production in Morocco. Here, we report comparative genomics of four Moroccan E. amylovora strains with the European strain CFBP1430 and North-American strain ATCC49946. Analysis of single nucleotide polymorphisms (SNPs) revealed gen...
| Autores principales: | , , , , , , , , |
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| Formato: | article |
| Lenguaje: | Inglés |
| Publicado: |
Elsevier
2022
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.11939/8061 https://www.sciencedirect.com/science/article/abs/pii/S0923250813001046 |
| _version_ | 1855032722212257792 |
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| author | Hannou, Najat Mondy, Samuel Planamente, Sara Moumni, Mohieddine Llop, Pablo López, María M. Manceau, Charles Barny, Marie-Anne Faure, Denis |
| author_browse | Barny, Marie-Anne Faure, Denis Hannou, Najat Llop, Pablo López, María M. Manceau, Charles Mondy, Samuel Moumni, Mohieddine Planamente, Sara |
| author_facet | Hannou, Najat Mondy, Samuel Planamente, Sara Moumni, Mohieddine Llop, Pablo López, María M. Manceau, Charles Barny, Marie-Anne Faure, Denis |
| author_sort | Hannou, Najat |
| collection | ReDivia |
| description | Erwinia amylovora causes economic losses that affect pear and apple production in Morocco. Here, we report comparative genomics of four Moroccan E. amylovora strains with the European strain CFBP1430 and North-American strain ATCC49946. Analysis of single nucleotide polymorphisms (SNPs) revealed genetic homogeneity of Moroccan's strains and their proximity to the European strain CFBP1430. Moreover, the collected sequences allowed the assembly of a 65 kpb plasmid, which is highly similar to the plasmid pEI70 harbored by several European E. amylovora isolates. This plasmid was found in 33% of the 40 E. amylovora strains collected from several host plants in 2009 and 2010 in Morocco. |
| format | article |
| id | ReDivia8061 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | ReDivia80612025-04-25T14:48:40Z Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco Hannou, Najat Mondy, Samuel Planamente, Sara Moumni, Mohieddine Llop, Pablo López, María M. Manceau, Charles Barny, Marie-Anne Faure, Denis Single nucleotide polymorphisms (SNPs) H20 Plant diseases U30 Research methods Erwinia amylovora Genomes Plasmids Virulence Fire blight Erwinia amylovora causes economic losses that affect pear and apple production in Morocco. Here, we report comparative genomics of four Moroccan E. amylovora strains with the European strain CFBP1430 and North-American strain ATCC49946. Analysis of single nucleotide polymorphisms (SNPs) revealed genetic homogeneity of Moroccan's strains and their proximity to the European strain CFBP1430. Moreover, the collected sequences allowed the assembly of a 65 kpb plasmid, which is highly similar to the plasmid pEI70 harbored by several European E. amylovora isolates. This plasmid was found in 33% of the 40 E. amylovora strains collected from several host plants in 2009 and 2010 in Morocco. 2022-04-29T16:21:02Z 2022-04-29T16:21:02Z 2012 article publishedVersion Hannou, N., Mondy, S., Planamente, S., Moumni, M., Llop, P., Lopez, M. M. et al. (2013). Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco. Research in Microbiology, 164(8), 815-820. 0923-2508 http://hdl.handle.net/20.500.11939/8061 10.1016/j.resmic.2013.06.003 https://www.sciencedirect.com/science/article/abs/pii/S0923250813001046 en This work was supported by cooperative projects between France and Morocco, Volubilis (MA/09/218) and CNRS-CNRST convention (22615-2009), and between Spain and Morocco (Number A/025045/09) funded by AECID from Spain. Atribución-NoComercial-SinDerivadas 3.0 España http://creativecommons.org/licenses/by-nc-nd/3.0/es/ openAccess Elsevier electronico |
| spellingShingle | Single nucleotide polymorphisms (SNPs) H20 Plant diseases U30 Research methods Erwinia amylovora Genomes Plasmids Virulence Fire blight Hannou, Najat Mondy, Samuel Planamente, Sara Moumni, Mohieddine Llop, Pablo López, María M. Manceau, Charles Barny, Marie-Anne Faure, Denis Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title | Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title_full | Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title_fullStr | Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title_full_unstemmed | Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title_short | Deep sequencing revealed genome-wide single-nucleotide polymorphism and plasmid content of Erwinia amylovora strains isolated in Middle Atlas, Morocco |
| title_sort | deep sequencing revealed genome wide single nucleotide polymorphism and plasmid content of erwinia amylovora strains isolated in middle atlas morocco |
| topic | Single nucleotide polymorphisms (SNPs) H20 Plant diseases U30 Research methods Erwinia amylovora Genomes Plasmids Virulence Fire blight |
| url | http://hdl.handle.net/20.500.11939/8061 https://www.sciencedirect.com/science/article/abs/pii/S0923250813001046 |
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