Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000
Ralstonia solanacearum is a β-proteobacterium which affects several hundred plant species and provokes important agronomic losses. Five biovars of this bacterium have been described and they show behavioural differences. In this study a random sequencing of the genome of R. solanacearum strain IVIA...
| Autores principales: | , , , , , , , , |
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| Formato: | article |
| Lenguaje: | Inglés |
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Wiley Online Library
2022
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| Acceso en línea: | http://hdl.handle.net/20.500.11939/8059 https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1439-0434.2006.01147.x |
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| author | Terol, Javier Munoz-Soriano, V. Arahal, D. R. Buades, C. Perez-Perez, A. Llop, Pablo Belmonte, U. C. F. López, María M. Pérez-Alonso, M. |
| author_browse | Arahal, D. R. Belmonte, U. C. F. Buades, C. Llop, Pablo López, María M. Munoz-Soriano, V. Perez-Perez, A. Pérez-Alonso, M. Terol, Javier |
| author_facet | Terol, Javier Munoz-Soriano, V. Arahal, D. R. Buades, C. Perez-Perez, A. Llop, Pablo Belmonte, U. C. F. López, María M. Pérez-Alonso, M. |
| author_sort | Terol, Javier |
| collection | ReDivia |
| description | Ralstonia solanacearum is a β-proteobacterium which affects several hundred plant species and provokes important agronomic losses. Five biovars of this bacterium have been described and they show behavioural differences. In this study a random sequencing of the genome of R. solanacearum strain IVIA 1602 (race 3, biovar 2), isolated from potato, was performed. The resulting 730 Genomic Survey Sequences (GSSs), representing 6.38% of the complete genome, were compared against the completely sequenced genome of strain GMI1000 (race 1, biovar 3), isolated from tomato, which is the only strain of this species sequenced until now. This comparative analysis showed, as expected, a high degree of similarity, but it also revealed strain-specific regions of the genome as well as a number of insertion/deletion events and chromosomal rearrangements. All together, this comparative analysis gives an overview of the genomic divergence between these two biovars of the R. solanacearum species complex. |
| format | article |
| id | ReDivia8059 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Wiley Online Library |
| publisherStr | Wiley Online Library |
| record_format | dspace |
| spelling | ReDivia80592025-04-25T14:48:42Z Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 Terol, Javier Munoz-Soriano, V. Arahal, D. R. Buades, C. Perez-Perez, A. Llop, Pablo Belmonte, U. C. F. López, María M. Pérez-Alonso, M. Random sequencing Strain comparison Genome sequencing IVIA H20 Plant diseases U30 Research methods Ralstonia solanacearum Strain differences Genomes Ralstonia solanacearum is a β-proteobacterium which affects several hundred plant species and provokes important agronomic losses. Five biovars of this bacterium have been described and they show behavioural differences. In this study a random sequencing of the genome of R. solanacearum strain IVIA 1602 (race 3, biovar 2), isolated from potato, was performed. The resulting 730 Genomic Survey Sequences (GSSs), representing 6.38% of the complete genome, were compared against the completely sequenced genome of strain GMI1000 (race 1, biovar 3), isolated from tomato, which is the only strain of this species sequenced until now. This comparative analysis showed, as expected, a high degree of similarity, but it also revealed strain-specific regions of the genome as well as a number of insertion/deletion events and chromosomal rearrangements. All together, this comparative analysis gives an overview of the genomic divergence between these two biovars of the R. solanacearum species complex. 2022-04-29T16:16:11Z 2022-04-29T16:16:11Z 2006 article publishedVersion Terol, J., Munoz‐Soriano, V., Arahal, D. R., Buades, C., Pérez‐Pérez, A., Llop, P. et al. (2006). Random genome sequencing of Ralstonia solanacearum strain IVIA 1602 and comparative analysis with strain GMI1000. Journal of Phytopathology, 154(9), 556-564. 1439-0434 http://hdl.handle.net/20.500.11939/8059 10.1111/j.1439-0434.2006.01147.x https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1439-0434.2006.01147.x en This study was supported by a grant from the Ministerio de Ciencia y Tecnología (CI02-27) and of Oficina de Ciencia y Tecnología, project CTIDI 2002/123. Atribución-NoComercial-SinDerivadas 3.0 España http://creativecommons.org/licenses/by-nc-nd/3.0/es/ openAccess Wiley Online Library electronico |
| spellingShingle | Random sequencing Strain comparison Genome sequencing IVIA H20 Plant diseases U30 Research methods Ralstonia solanacearum Strain differences Genomes Terol, Javier Munoz-Soriano, V. Arahal, D. R. Buades, C. Perez-Perez, A. Llop, Pablo Belmonte, U. C. F. López, María M. Pérez-Alonso, M. Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title | Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title_full | Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title_fullStr | Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title_full_unstemmed | Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title_short | Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000 |
| title_sort | random genome sequencing of ralstonia solanacearum strain ivia 1602 and comparative analysis with strain gmi1000 |
| topic | Random sequencing Strain comparison Genome sequencing IVIA H20 Plant diseases U30 Research methods Ralstonia solanacearum Strain differences Genomes |
| url | http://hdl.handle.net/20.500.11939/8059 https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1439-0434.2006.01147.x |
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