The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece
A significant number of new members of the genus Vitivirus have been identified recently, mainly due to the advent of high-throughput sequencing (HTS). Grapevine virus I (GVI), which was identified in New Zealand in 2018, is one of these viruses. RNAseq HTS analysis of a Greek grapevine (cv. Daphnia...
| Autores principales: | , , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2021
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.11939/7413 https://link.springer.com/article/10.1007%2Fs00705-020-04762-9 |
| _version_ | 1855492280251580416 |
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| author | Lotos, Leonidas Ruiz-García, Ana B. Panailidou, Polina Olmos, Antonio Katis, Nikolaos Maliogka, Varvara |
| author_browse | Katis, Nikolaos Lotos, Leonidas Maliogka, Varvara Olmos, Antonio Panailidou, Polina Ruiz-García, Ana B. |
| author_facet | Lotos, Leonidas Ruiz-García, Ana B. Panailidou, Polina Olmos, Antonio Katis, Nikolaos Maliogka, Varvara |
| author_sort | Lotos, Leonidas |
| collection | ReDivia |
| description | A significant number of new members of the genus Vitivirus have been identified recently, mainly due to the advent of high-throughput sequencing (HTS). Grapevine virus I (GVI), which was identified in New Zealand in 2018, is one of these viruses. RNAseq HTS analysis of a Greek grapevine (cv. Daphnia), revealed the presence of a GVI-like isolate (D2-1/19). Sequence analysis confirmed the classification of D2-1/19 as GVI. However, both sequence and phylogenetic data exhibited high levels of variability between D2-1/19 and the previously characterized GVI isolates. This study provides the full-length sequence of a divergent GVI isolate, adding knowledge to the limited information available about this recently identified virus. |
| format | Artículo |
| id | ReDivia7413 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | ReDivia74132025-04-25T14:48:20Z The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece Lotos, Leonidas Ruiz-García, Ana B. Panailidou, Polina Olmos, Antonio Katis, Nikolaos Maliogka, Varvara Grapevine viruses Genome sequence H20 Plant diseases Greece A significant number of new members of the genus Vitivirus have been identified recently, mainly due to the advent of high-throughput sequencing (HTS). Grapevine virus I (GVI), which was identified in New Zealand in 2018, is one of these viruses. RNAseq HTS analysis of a Greek grapevine (cv. Daphnia), revealed the presence of a GVI-like isolate (D2-1/19). Sequence analysis confirmed the classification of D2-1/19 as GVI. However, both sequence and phylogenetic data exhibited high levels of variability between D2-1/19 and the previously characterized GVI isolates. This study provides the full-length sequence of a divergent GVI isolate, adding knowledge to the limited information available about this recently identified virus. 2021-06-08T13:06:26Z 2021-06-08T13:06:26Z 2020 article publishedVersion Lotos, L., Ruiz-García, A. B., Panailidou, P., Olmos, A., Katis, N. I. & Maliogka, V. I. (2020). The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece. Archives of Virology, 165(12), 3003-3006. 0304-8608 1432-8798 (e-ISSN) http://hdl.handle.net/20.500.11939/7413 10.1007/s00705-020-04762-9 https://link.springer.com/article/10.1007%2Fs00705-020-04762-9 en Atribución-NoComercial-SinDerivadas 3.0 España http://creativecommons.org/licenses/by-nc-nd/3.0/es/ closedAccess Springer electronico |
| spellingShingle | Grapevine viruses Genome sequence H20 Plant diseases Greece Lotos, Leonidas Ruiz-García, Ana B. Panailidou, Polina Olmos, Antonio Katis, Nikolaos Maliogka, Varvara The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title | The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title_full | The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title_fullStr | The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title_full_unstemmed | The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title_short | The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece |
| title_sort | complete genome sequence of a divergent grapevine virus i isolate naturally infecting grapevine in greece |
| topic | Grapevine viruses Genome sequence H20 Plant diseases Greece |
| url | http://hdl.handle.net/20.500.11939/7413 https://link.springer.com/article/10.1007%2Fs00705-020-04762-9 |
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