Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR
Plum pox virus (PPV) is the most important limiting factor for apricot (Prunus armeniaca L.) production worldwide, and development of resistant cultivars has been proven to be the best solution in the long-term. However, just like in other woody species, apricot breeding is highly time and space dem...
| Autores principales: | , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
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MDPI
2020
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.11939/6660 https://www.mdpi.com/2073-4395/10/9/1292 |
| _version_ | 1855492127223447552 |
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| author | Polo-Oltra, Ángela Romero, Carlos López, Inmaculada Badenes, María L. Zuriaga, Elena |
| author_browse | Badenes, María L. López, Inmaculada Polo-Oltra, Ángela Romero, Carlos Zuriaga, Elena |
| author_facet | Polo-Oltra, Ángela Romero, Carlos López, Inmaculada Badenes, María L. Zuriaga, Elena |
| author_sort | Polo-Oltra, Ángela |
| collection | ReDivia |
| description | Plum pox virus (PPV) is the most important limiting factor for apricot (Prunus armeniaca L.) production worldwide, and development of resistant cultivars has been proven to be the best solution in the long-term. However, just like in other woody species, apricot breeding is highly time and space demanding, and this is particularly true for PPV resistance phenotyping. Therefore, marker-assisted selection (MAS) may be very helpful to speed up breeding programs. Tightly linked ParPMC1 and ParPMC2, meprin and TRAF-C homology (MATH)-domain-containing genes have been proposed as host susceptibility genes required for PPV infection. Contribution of additional genes to PPV resistance cannot be discarded, but all available studies undoubtedly show a strong correlation between ParPMC2-resistant alleles (ParPMC2res) and PPV resistance. The ParPMC2res allele was shown to carry a 5-bp deletion (ParPMC2-del) within the second exon that has been characterized as a molecular marker suitable for MAS (PMC2). Based on this finding, we propose here a method for PPV resistance selection in apricot by combining high-throughput DNA extraction of 384 samples in 2 working days and the allele-specific genotyping of PMC2 on agarose gel. Moreover, the PMC2 genotype has been determined by PCR or by using whole-genome sequences (WGS) in 175 apricot accessions. These results were complemented with phenotypic and/or genotypic data available in the literature to reach a total of 325 apricot accessions. As a whole, we conclude that this is a time-efficient, cost-effective and straightforward method for PPV resistance screening that can be highly useful for apricot breeding programs. |
| format | Artículo |
| id | ReDivia6660 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | ReDivia66602025-04-25T14:47:34Z Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR Polo-Oltra, Ángela Romero, Carlos López, Inmaculada Badenes, María L. Zuriaga, Elena Marker-assisted selection (MAS) PPV resistance Agarose parPMC MATH parPMC2-del H20 Plant diseases F30 Plant genetics and breeding Apricots Breeding Plum pox virus (PPV) is the most important limiting factor for apricot (Prunus armeniaca L.) production worldwide, and development of resistant cultivars has been proven to be the best solution in the long-term. However, just like in other woody species, apricot breeding is highly time and space demanding, and this is particularly true for PPV resistance phenotyping. Therefore, marker-assisted selection (MAS) may be very helpful to speed up breeding programs. Tightly linked ParPMC1 and ParPMC2, meprin and TRAF-C homology (MATH)-domain-containing genes have been proposed as host susceptibility genes required for PPV infection. Contribution of additional genes to PPV resistance cannot be discarded, but all available studies undoubtedly show a strong correlation between ParPMC2-resistant alleles (ParPMC2res) and PPV resistance. The ParPMC2res allele was shown to carry a 5-bp deletion (ParPMC2-del) within the second exon that has been characterized as a molecular marker suitable for MAS (PMC2). Based on this finding, we propose here a method for PPV resistance selection in apricot by combining high-throughput DNA extraction of 384 samples in 2 working days and the allele-specific genotyping of PMC2 on agarose gel. Moreover, the PMC2 genotype has been determined by PCR or by using whole-genome sequences (WGS) in 175 apricot accessions. These results were complemented with phenotypic and/or genotypic data available in the literature to reach a total of 325 apricot accessions. As a whole, we conclude that this is a time-efficient, cost-effective and straightforward method for PPV resistance screening that can be highly useful for apricot breeding programs. 2020-10-16T12:24:22Z 2020-10-16T12:24:22Z 2020 article publishedVersion Polo-Oltra, Á., Romero, C., López, I., Badenes, M. L. & Zuriaga, E. (2020). Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR. Agronomy, 10(9), 1292. 2073-4395 http://hdl.handle.net/20.500.11939/6660 10.3390/agronomy10091292 10.3390/agronomy12030561 https://www.mdpi.com/2073-4395/10/9/1292 en Atribución-NoComercial-SinDerivadas 3.0 España http://creativecommons.org/licenses/by-nc-nd/3.0/es/ openAccess MDPI electronico |
| spellingShingle | Marker-assisted selection (MAS) PPV resistance Agarose parPMC MATH parPMC2-del H20 Plant diseases F30 Plant genetics and breeding Apricots Breeding Polo-Oltra, Ángela Romero, Carlos López, Inmaculada Badenes, María L. Zuriaga, Elena Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title | Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title_full | Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title_fullStr | Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title_full_unstemmed | Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title_short | Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR |
| title_sort | cost effective and time efficient molecular assisted selection for ppv resistance in apricot based on parpmc2 allele specific pcr |
| topic | Marker-assisted selection (MAS) PPV resistance Agarose parPMC MATH parPMC2-del H20 Plant diseases F30 Plant genetics and breeding Apricots Breeding |
| url | http://hdl.handle.net/20.500.11939/6660 https://www.mdpi.com/2073-4395/10/9/1292 |
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