Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches
Xylella fastidiosa is an economically important plant pathogenic bacterium of global importance associated, since 2013, with a devastating epidemic in olive trees in Italy. Since then, several outbreaks of this pathogen have been reported in other European member countries including Spain, France, a...
| Autores principales: | , , , , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
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APS (The American Phytopathological Society)
2020
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| Acceso en línea: | http://hdl.handle.net/20.500.11939/6466 https://apsjournals.apsnet.org/doi/full/10.1094/PHYTO-01-20-0012-A |
| _version_ | 1855492089630949376 |
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| author | Arias-Giraldo, Luis F. Giampetruzzi, Annalisa Metsis, Madis Marco-Noales, Ester Imperial, Juan Velasco-Amo, María P. Román-Écija, Miguel Landa, Blanca B. |
| author_browse | Arias-Giraldo, Luis F. Giampetruzzi, Annalisa Imperial, Juan Landa, Blanca B. Marco-Noales, Ester Metsis, Madis Román-Écija, Miguel Velasco-Amo, María P. |
| author_facet | Arias-Giraldo, Luis F. Giampetruzzi, Annalisa Metsis, Madis Marco-Noales, Ester Imperial, Juan Velasco-Amo, María P. Román-Écija, Miguel Landa, Blanca B. |
| author_sort | Arias-Giraldo, Luis F. |
| collection | ReDivia |
| description | Xylella fastidiosa is an economically important plant pathogenic bacterium of global importance associated, since 2013, with a devastating epidemic in olive trees in Italy. Since then, several outbreaks of this pathogen have been reported in other European member countries including Spain, France, and Portugal. In Spain, the three major subspecies (subsp. fastidiosa, multiplex, and pauca) of the bacterium have been detected in the Balearic Islands, but only subspecies multiplex in the mainland (Alicante). We present the first complete genome sequences of two Spanish strains: X. fastidiosa subsp. fastidiosa IVIA5235 from Mallorca and X. fastidiosa subsp. multiplex IVIA5901 from Alicante, using Oxford Nanopore and Illumina sequence reads, and two hybrid approaches for genome assembly. These completed genomes will provide a resource to better understand the biology of these X. fastidiosa strains. |
| format | Artículo |
| id | ReDivia6466 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | APS (The American Phytopathological Society) |
| publisherStr | APS (The American Phytopathological Society) |
| record_format | dspace |
| spelling | ReDivia64662025-04-25T14:47:10Z Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches Arias-Giraldo, Luis F. Giampetruzzi, Annalisa Metsis, Madis Marco-Noales, Ester Imperial, Juan Velasco-Amo, María P. Román-Écija, Miguel Landa, Blanca B. Hybrid assembly Illumina Oxford nanopore Population biology H20 Plant diseases Bacteriology Xylella fastidiosa Xylella fastidiosa is an economically important plant pathogenic bacterium of global importance associated, since 2013, with a devastating epidemic in olive trees in Italy. Since then, several outbreaks of this pathogen have been reported in other European member countries including Spain, France, and Portugal. In Spain, the three major subspecies (subsp. fastidiosa, multiplex, and pauca) of the bacterium have been detected in the Balearic Islands, but only subspecies multiplex in the mainland (Alicante). We present the first complete genome sequences of two Spanish strains: X. fastidiosa subsp. fastidiosa IVIA5235 from Mallorca and X. fastidiosa subsp. multiplex IVIA5901 from Alicante, using Oxford Nanopore and Illumina sequence reads, and two hybrid approaches for genome assembly. These completed genomes will provide a resource to better understand the biology of these X. fastidiosa strains. 2020-05-27T08:44:00Z 2020-05-27T08:44:00Z 2020 article publishedVersion Arias-Giraldo, L. F., Giampetruzzi, A., Metsis, M., Marco-Noales, E., Imperial, J., Velasco-Amo, M. P. et al. (2020). Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches; Phytopathology, 110(5); 969-972. 0031-949X http://hdl.handle.net/20.500.11939/6466 10.1094/PHYTO-01-20-0012-A https://apsjournals.apsnet.org/doi/full/10.1094/PHYTO-01-20-0012-A en Atribución-NoComercial-SinDerivadas 3.0 España http://creativecommons.org/licenses/by-nc-nd/3.0/es/ APS (The American Phytopathological Society) electronico |
| spellingShingle | Hybrid assembly Illumina Oxford nanopore Population biology H20 Plant diseases Bacteriology Xylella fastidiosa Arias-Giraldo, Luis F. Giampetruzzi, Annalisa Metsis, Madis Marco-Noales, Ester Imperial, Juan Velasco-Amo, María P. Román-Écija, Miguel Landa, Blanca B. Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title | Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title_full | Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title_fullStr | Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title_full_unstemmed | Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title_short | Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches |
| title_sort | complete circularized genome data of two spanish strains of xylella fastidiosa ivia5235 and ivia5901 using hybrid assembly approaches |
| topic | Hybrid assembly Illumina Oxford nanopore Population biology H20 Plant diseases Bacteriology Xylella fastidiosa |
| url | http://hdl.handle.net/20.500.11939/6466 https://apsjournals.apsnet.org/doi/full/10.1094/PHYTO-01-20-0012-A |
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