Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain
An outbreak of Xylella fastidiosa subsp. multiplex sequence type ST6 was discovered in 2017 in mainland Spain affecting almond trees. Two cultured almond strains, "ESVL" and "IVIA5901," were subjected to high throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively i...
| Autores principales: | , , , , , , , , , , , , , , |
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| Formato: | article |
| Lenguaje: | Inglés |
| Publicado: |
2020
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| Acceso en línea: | http://hdl.handle.net/20.500.11939/6315 https://apsjournals.apsnet.org/doi/10.1094/PHYTO-09-18-0328-A |
| _version_ | 1855032406705176576 |
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| author | Giampetruzzi, Annalisa Velasco-Amo, María P. Marco-Noales, Ester Montes-Borrego, Miguel Román-Écija, Miguel Navarro-Herrero, Inmaculada Monterde, Adela Barbé, Silvia Almeida, Rodrigo P. P. Saldarelli, Pasquale Saponari, Maria Montilon, Vito Savino, Vito Nicola Boscia, Donato Landa, Blanca B. |
| author_browse | Almeida, Rodrigo P. P. Barbé, Silvia Boscia, Donato Giampetruzzi, Annalisa Landa, Blanca B. Marco-Noales, Ester Monterde, Adela Montes-Borrego, Miguel Montilon, Vito Navarro-Herrero, Inmaculada Román-Écija, Miguel Saldarelli, Pasquale Saponari, Maria Savino, Vito Nicola Velasco-Amo, María P. |
| author_facet | Giampetruzzi, Annalisa Velasco-Amo, María P. Marco-Noales, Ester Montes-Borrego, Miguel Román-Écija, Miguel Navarro-Herrero, Inmaculada Monterde, Adela Barbé, Silvia Almeida, Rodrigo P. P. Saldarelli, Pasquale Saponari, Maria Montilon, Vito Savino, Vito Nicola Boscia, Donato Landa, Blanca B. |
| author_sort | Giampetruzzi, Annalisa |
| collection | ReDivia |
| description | An outbreak of Xylella fastidiosa subsp. multiplex sequence type ST6 was discovered in 2017 in mainland Spain affecting almond trees. Two cultured almond strains, "ESVL" and "IVIA5901," were subjected to high throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively indicated they belong to the subspecies multiplex, and pairwise comparisons of the chromosomal genomes showed an average nucleotide identity higher than 99%. Interestingly, the two strains differ for the presence of the plasmids pXF64-Hb_ESVL and pUCLA-ESVL detected only in the ESVL strain. The availability of these draft genomes contribute to extend the European genomic sequence dataset, a first step toward setting new research to elucidate the pathway of introduction and spread of the numerous strains of this subspecies so far detected in Europe. |
| format | article |
| id | ReDivia6315 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| record_format | dspace |
| spelling | ReDivia63152025-04-25T14:46:51Z Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain Giampetruzzi, Annalisa Velasco-Amo, María P. Marco-Noales, Ester Montes-Borrego, Miguel Román-Écija, Miguel Navarro-Herrero, Inmaculada Monterde, Adela Barbé, Silvia Almeida, Rodrigo P. P. Saldarelli, Pasquale Saponari, Maria Montilon, Vito Savino, Vito Nicola Boscia, Donato Landa, Blanca B. An outbreak of Xylella fastidiosa subsp. multiplex sequence type ST6 was discovered in 2017 in mainland Spain affecting almond trees. Two cultured almond strains, "ESVL" and "IVIA5901," were subjected to high throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively indicated they belong to the subspecies multiplex, and pairwise comparisons of the chromosomal genomes showed an average nucleotide identity higher than 99%. Interestingly, the two strains differ for the presence of the plasmids pXF64-Hb_ESVL and pUCLA-ESVL detected only in the ESVL strain. The availability of these draft genomes contribute to extend the European genomic sequence dataset, a first step toward setting new research to elucidate the pathway of introduction and spread of the numerous strains of this subspecies so far detected in Europe. 2020-02-21T11:51:31Z 2020-02-21T11:51:31Z 2019 article publishedVersion Giampetruzzi, A., Velasco-Amo, M. P., Marco-Noales, E., Montes-Borrego, M., Roman-Ecija, M., Navarro, I. et al. (2019). Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain. Phytopathology, 109(2), 219-221. 0031-949X http://hdl.handle.net/20.500.11939/6315 10.1094/PHYTO-09-18-0328-A https://apsjournals.apsnet.org/doi/10.1094/PHYTO-09-18-0328-A en openAccess electronico |
| spellingShingle | Giampetruzzi, Annalisa Velasco-Amo, María P. Marco-Noales, Ester Montes-Borrego, Miguel Román-Écija, Miguel Navarro-Herrero, Inmaculada Monterde, Adela Barbé, Silvia Almeida, Rodrigo P. P. Saldarelli, Pasquale Saponari, Maria Montilon, Vito Savino, Vito Nicola Boscia, Donato Landa, Blanca B. Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title | Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title_full | Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title_fullStr | Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title_full_unstemmed | Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title_short | Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain |
| title_sort | draft genome resources of two strains esvl and ivia5901 of xylella fastidiosa associated with almond leaf scorch disease in alicante spain |
| url | http://hdl.handle.net/20.500.11939/6315 https://apsjournals.apsnet.org/doi/10.1094/PHYTO-09-18-0328-A |
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