Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification
Flow cytometry is widely used to determine genome size and ploidy level in plants. This technique, when coupled with fluorescence-activated cell sorting (FACS), whole genome amplification and genotyping (WGA), opens up new opportunities for genetic studies of individualized nuclei. This strategy was...
| Main Authors: | , , , , , |
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| Format: | article |
| Language: | Inglés |
| Published: |
2020
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| Online Access: | http://hdl.handle.net/20.500.11939/6305 https://www.frontiersin.org/articles/10.3389/fpls.2019.01174/full |
| _version_ | 1855032404918403072 |
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| author | Garavello, Miguel Cuenca, José Dreissig, Steven Fuchs, Jörg Houben, Andreas Aleza, Pablo |
| author_browse | Aleza, Pablo Cuenca, José Dreissig, Steven Fuchs, Jörg Garavello, Miguel Houben, Andreas |
| author_facet | Garavello, Miguel Cuenca, José Dreissig, Steven Fuchs, Jörg Houben, Andreas Aleza, Pablo |
| author_sort | Garavello, Miguel |
| collection | ReDivia |
| description | Flow cytometry is widely used to determine genome size and ploidy level in plants. This technique, when coupled with fluorescence-activated cell sorting (FACS), whole genome amplification and genotyping (WGA), opens up new opportunities for genetic studies of individualized nuclei. This strategy was used to analyze the genetic composition of single pollen nuclei of different citrus species. The flow cytometry and microscope observations allowed us to differentiate the populations of pollen nuclei present in the diploid and euploid genotypes analyzed, showing that citrus has binuclear pollen. We have identified in the "CSO" tangor an additional nuclei population composed by the vegetative plus generative nuclei. Genotyping of this nuclei population revealed that vegetative and generative nuclei show the same genetic configuration. In addition, we have demonstrated the presence of unreduced gametes in the diploid genotype "Mexican lime." Genomic amplification is a robust method for haploid nuclei genotyping with several molecular markers, whereas in diploid nuclei using heterozygous markers showed a bias towards one of the two alleles, limiting the use of this tool in this type of nuclei. We further discuss the importance and applications of single pollen genotyping in citrus genetic studies. |
| format | article |
| id | ReDivia6305 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| record_format | dspace |
| spelling | ReDivia63052025-04-25T14:46:48Z Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification Garavello, Miguel Cuenca, José Dreissig, Steven Fuchs, Jörg Houben, Andreas Aleza, Pablo Flow cytometry is widely used to determine genome size and ploidy level in plants. This technique, when coupled with fluorescence-activated cell sorting (FACS), whole genome amplification and genotyping (WGA), opens up new opportunities for genetic studies of individualized nuclei. This strategy was used to analyze the genetic composition of single pollen nuclei of different citrus species. The flow cytometry and microscope observations allowed us to differentiate the populations of pollen nuclei present in the diploid and euploid genotypes analyzed, showing that citrus has binuclear pollen. We have identified in the "CSO" tangor an additional nuclei population composed by the vegetative plus generative nuclei. Genotyping of this nuclei population revealed that vegetative and generative nuclei show the same genetic configuration. In addition, we have demonstrated the presence of unreduced gametes in the diploid genotype "Mexican lime." Genomic amplification is a robust method for haploid nuclei genotyping with several molecular markers, whereas in diploid nuclei using heterozygous markers showed a bias towards one of the two alleles, limiting the use of this tool in this type of nuclei. We further discuss the importance and applications of single pollen genotyping in citrus genetic studies. 2020-02-21T11:51:31Z 2020-02-21T11:51:31Z 2019 article publishedVersion Garavello, M., Cuenca, J., Dreissig, S., Fuchs, J., Houben, A., & Aleza, P. (2019). Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification. Frontiers in Plant Science, 10. 1664-462X http://hdl.handle.net/20.500.11939/6305 10.3389/fpls.2019.01174 https://www.frontiersin.org/articles/10.3389/fpls.2019.01174/full en openAccess electronico |
| spellingShingle | Garavello, Miguel Cuenca, José Dreissig, Steven Fuchs, Jörg Houben, Andreas Aleza, Pablo Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title | Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title_full | Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title_fullStr | Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title_full_unstemmed | Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title_short | Assessing Ploidy Level Analysis and Single Pollen Genotyping of Diploid and Euploid Citrus Genotypes by Fluorescence-Activated Cell Sorting and Whole-Genome Amplification |
| title_sort | assessing ploidy level analysis and single pollen genotyping of diploid and euploid citrus genotypes by fluorescence activated cell sorting and whole genome amplification |
| url | http://hdl.handle.net/20.500.11939/6305 https://www.frontiersin.org/articles/10.3389/fpls.2019.01174/full |
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