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Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain

Xanthomonas arboricola is a species in genus Xanthomonas which is mainly comprised of plant pathogens. Among the members of this taxon, X. arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond, is distributed worldwide although it is considered a quarantine path...

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Main Authors: Garita-Cambronero, Jerson, Palacio-Bielsa, Ana, López, María M., Cubero, Jaime
Format: Artículo
Language:Inglés
Published: 2017
Online Access:http://hdl.handle.net/20.500.11939/5257
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author Garita-Cambronero, Jerson
Palacio-Bielsa, Ana
López, María M.
Cubero, Jaime
author_browse Cubero, Jaime
Garita-Cambronero, Jerson
López, María M.
Palacio-Bielsa, Ana
author_facet Garita-Cambronero, Jerson
Palacio-Bielsa, Ana
López, María M.
Cubero, Jaime
author_sort Garita-Cambronero, Jerson
collection ReDivia
description Xanthomonas arboricola is a species in genus Xanthomonas which is mainly comprised of plant pathogens. Among the members of this taxon, X. arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond, is distributed worldwide although it is considered a quarantine pathogen in the European Union. Herein, we report the draft genome sequence, the classification, the annotation and the sequence analyses of a virulent strain, IVIA 2626.1, and an avirulent strain, CITA 44, of X. arboricola associated with Prunus spp. The draft genome sequence of IVIA 2626.1 consists of 5,027,671 bp, 4,720 protein coding genes and 50 RNA encoding genes. The draft genome sequence of strain CITA 44 consists of 4,760,482 bp, 4,250 protein coding genes and 56 RNA coding genes. Initial comparative analyses reveals differences in the presence of structural and regulatory components of the type IV pilus, the type III secretion system, the type III effectors as well as variations in the number of the type IV secretion systems. The genome sequence data for these strains will facilitate the development of molecular diagnostics protocols that differentiate virulent and avirulent strains. In addition, comparative genome analysis will provide insights into the plant-pathogen interaction during the bacterial spot disease process.
format Artículo
id ReDivia5257
institution Instituto Valenciano de Investigaciones Agrarias (IVIA)
language Inglés
publishDate 2017
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spelling ReDivia52572025-04-25T14:45:47Z Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain Garita-Cambronero, Jerson Palacio-Bielsa, Ana López, María M. Cubero, Jaime Xanthomonas arboricola is a species in genus Xanthomonas which is mainly comprised of plant pathogens. Among the members of this taxon, X. arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond, is distributed worldwide although it is considered a quarantine pathogen in the European Union. Herein, we report the draft genome sequence, the classification, the annotation and the sequence analyses of a virulent strain, IVIA 2626.1, and an avirulent strain, CITA 44, of X. arboricola associated with Prunus spp. The draft genome sequence of IVIA 2626.1 consists of 5,027,671 bp, 4,720 protein coding genes and 50 RNA encoding genes. The draft genome sequence of strain CITA 44 consists of 4,760,482 bp, 4,250 protein coding genes and 56 RNA coding genes. Initial comparative analyses reveals differences in the presence of structural and regulatory components of the type IV pilus, the type III secretion system, the type III effectors as well as variations in the number of the type IV secretion systems. The genome sequence data for these strains will facilitate the development of molecular diagnostics protocols that differentiate virulent and avirulent strains. In addition, comparative genome analysis will provide insights into the plant-pathogen interaction during the bacterial spot disease process. 2017-06-01T10:11:59Z 2017-06-01T10:11:59Z 2016 article publishedVersion Garita-Cambronero, Jerson, Palacio-Bielsa, Ana, López, María M., Cubero, Jaime (2016). Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain. Standards in Genomic Sciences, 11(1), 1-10. 1944-3277 http://hdl.handle.net/20.500.11939/5257 10.1186/s40793-016-0132-3 en openAccess Impreso
spellingShingle Garita-Cambronero, Jerson
Palacio-Bielsa, Ana
López, María M.
Cubero, Jaime
Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title_full Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title_fullStr Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title_full_unstemmed Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title_short Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
title_sort draft genome sequence for virulent and avirulent strains of xanthomonas arboricola isolated from prunus spp in spain
url http://hdl.handle.net/20.500.11939/5257
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AT palaciobielsaana draftgenomesequenceforvirulentandavirulentstrainsofxanthomonasarboricolaisolatedfromprunussppinspain
AT lopezmariam draftgenomesequenceforvirulentandavirulentstrainsofxanthomonasarboricolaisolatedfromprunussppinspain
AT cuberojaime draftgenomesequenceforvirulentandavirulentstrainsofxanthomonasarboricolaisolatedfromprunussppinspain

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