Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes—a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-o...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
| Publicado: |
2017
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| Acceso en línea: | http://hdl.handle.net/20.500.11939/4773 |
| _version_ | 1855491811517136896 |
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| author | Wu, Guohong Albert Prochnik, Simon Jenkins, Jerry Salse, Jerome Hellsten, Uffe Murat, Florent Perrier, Xavier Ruiz, Manuel Scalabrin, Simone Terol, Javier Takita, Marco Aurelio Labadie, Karine Poulain, Julie Couloux, Arnaud Jabbari, Kamel Cattonaro, Federica Del Fabbro, Cristian Pinosio, Sara Zuccolo, Andrea Chapman, Jarrod Grimwood, Jane Tadeo, Francisco R. Estornell, Leandro H. Munoz-Sanz, Juan V. Ibanez, Victoria Herrero-Ortega, Amparo Aleza, Pablo Perez-Perez, Julian Ramon, Daniel Brunel, Dominique Luro, Francois Chen, Chunxian Farmerie, William G. Desany, Brian Kodira, Chinnappa Mohiuddin, Mohammed Harkins, Tim Fredrikson, Karin Burns, Paul Lomsadze, Alexandre Borodovsky, Mark Reforgiato, Giuseppe Freitas-Astua, Juliana Quetier, Francis Navarro, Luis Roose, Mikeal L. Wincker, Patrick Schmutz, Jeremy Morgante, Michele Machado, Marcos Antonio Talón, Manuel Jaillon, Olivier Ollitrault, Patrick Gmitter Jr., Frederick G. Rokhsar, Daniel S. |
| author_browse | Aleza, Pablo Borodovsky, Mark Brunel, Dominique Burns, Paul Cattonaro, Federica Chapman, Jarrod Chen, Chunxian Couloux, Arnaud Del Fabbro, Cristian Desany, Brian Estornell, Leandro H. Farmerie, William G. Fredrikson, Karin Freitas-Astua, Juliana Gmitter Jr., Frederick G. Grimwood, Jane Harkins, Tim Hellsten, Uffe Herrero-Ortega, Amparo Ibanez, Victoria Jabbari, Kamel Jaillon, Olivier Jenkins, Jerry Kodira, Chinnappa Labadie, Karine Lomsadze, Alexandre Luro, Francois Machado, Marcos Antonio Mohiuddin, Mohammed Morgante, Michele Munoz-Sanz, Juan V. Murat, Florent Navarro, Luis Ollitrault, Patrick Perez-Perez, Julian Perrier, Xavier Pinosio, Sara Poulain, Julie Prochnik, Simon Quetier, Francis Ramon, Daniel Reforgiato, Giuseppe Rokhsar, Daniel S. Roose, Mikeal L. Ruiz, Manuel Salse, Jerome Scalabrin, Simone Schmutz, Jeremy Tadeo, Francisco R. Takita, Marco Aurelio Talón, Manuel Terol, Javier Wincker, Patrick Wu, Guohong Albert Zuccolo, Andrea |
| author_facet | Wu, Guohong Albert Prochnik, Simon Jenkins, Jerry Salse, Jerome Hellsten, Uffe Murat, Florent Perrier, Xavier Ruiz, Manuel Scalabrin, Simone Terol, Javier Takita, Marco Aurelio Labadie, Karine Poulain, Julie Couloux, Arnaud Jabbari, Kamel Cattonaro, Federica Del Fabbro, Cristian Pinosio, Sara Zuccolo, Andrea Chapman, Jarrod Grimwood, Jane Tadeo, Francisco R. Estornell, Leandro H. Munoz-Sanz, Juan V. Ibanez, Victoria Herrero-Ortega, Amparo Aleza, Pablo Perez-Perez, Julian Ramon, Daniel Brunel, Dominique Luro, Francois Chen, Chunxian Farmerie, William G. Desany, Brian Kodira, Chinnappa Mohiuddin, Mohammed Harkins, Tim Fredrikson, Karin Burns, Paul Lomsadze, Alexandre Borodovsky, Mark Reforgiato, Giuseppe Freitas-Astua, Juliana Quetier, Francis Navarro, Luis Roose, Mikeal L. Wincker, Patrick Schmutz, Jeremy Morgante, Michele Machado, Marcos Antonio Talón, Manuel Jaillon, Olivier Ollitrault, Patrick Gmitter Jr., Frederick G. Rokhsar, Daniel S. |
| author_sort | Wu, Guohong Albert |
| collection | ReDivia |
| description | Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes—a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes—and show that cultivated types derive from two progenitor species. Although cultivated pummelos represent selections from one progenitor species, Citrus maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species Citrus reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, thus implying that wild mandarins were part of the early breeding germplasm. A Chinese wild 'mandarin' diverges substantially from C. reticulata, thus suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and facilitates sequence-directed genetic improvement. |
| format | Artículo |
| id | ReDivia4773 |
| institution | Instituto Valenciano de Investigaciones Agrarias (IVIA) |
| language | Inglés |
| publishDate | 2017 |
| publishDateRange | 2017 |
| publishDateSort | 2017 |
| record_format | dspace |
| spelling | ReDivia47732025-04-25T14:44:22Z Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication Wu, Guohong Albert Prochnik, Simon Jenkins, Jerry Salse, Jerome Hellsten, Uffe Murat, Florent Perrier, Xavier Ruiz, Manuel Scalabrin, Simone Terol, Javier Takita, Marco Aurelio Labadie, Karine Poulain, Julie Couloux, Arnaud Jabbari, Kamel Cattonaro, Federica Del Fabbro, Cristian Pinosio, Sara Zuccolo, Andrea Chapman, Jarrod Grimwood, Jane Tadeo, Francisco R. Estornell, Leandro H. Munoz-Sanz, Juan V. Ibanez, Victoria Herrero-Ortega, Amparo Aleza, Pablo Perez-Perez, Julian Ramon, Daniel Brunel, Dominique Luro, Francois Chen, Chunxian Farmerie, William G. Desany, Brian Kodira, Chinnappa Mohiuddin, Mohammed Harkins, Tim Fredrikson, Karin Burns, Paul Lomsadze, Alexandre Borodovsky, Mark Reforgiato, Giuseppe Freitas-Astua, Juliana Quetier, Francis Navarro, Luis Roose, Mikeal L. Wincker, Patrick Schmutz, Jeremy Morgante, Michele Machado, Marcos Antonio Talón, Manuel Jaillon, Olivier Ollitrault, Patrick Gmitter Jr., Frederick G. Rokhsar, Daniel S. Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes—a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes—and show that cultivated types derive from two progenitor species. Although cultivated pummelos represent selections from one progenitor species, Citrus maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species Citrus reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, thus implying that wild mandarins were part of the early breeding germplasm. A Chinese wild 'mandarin' diverges substantially from C. reticulata, thus suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and facilitates sequence-directed genetic improvement. 2017-06-01T10:10:58Z 2017-06-01T10:10:58Z 2014 JUL 2014 article publishedVersion Wu, G. Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, X., et al. (2014). Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature biotechnology, 32(7), 656-662. 1087-0156 http://hdl.handle.net/20.500.11939/4773 10.1038/nbt.2906 en openAccess Impreso |
| spellingShingle | Wu, Guohong Albert Prochnik, Simon Jenkins, Jerry Salse, Jerome Hellsten, Uffe Murat, Florent Perrier, Xavier Ruiz, Manuel Scalabrin, Simone Terol, Javier Takita, Marco Aurelio Labadie, Karine Poulain, Julie Couloux, Arnaud Jabbari, Kamel Cattonaro, Federica Del Fabbro, Cristian Pinosio, Sara Zuccolo, Andrea Chapman, Jarrod Grimwood, Jane Tadeo, Francisco R. Estornell, Leandro H. Munoz-Sanz, Juan V. Ibanez, Victoria Herrero-Ortega, Amparo Aleza, Pablo Perez-Perez, Julian Ramon, Daniel Brunel, Dominique Luro, Francois Chen, Chunxian Farmerie, William G. Desany, Brian Kodira, Chinnappa Mohiuddin, Mohammed Harkins, Tim Fredrikson, Karin Burns, Paul Lomsadze, Alexandre Borodovsky, Mark Reforgiato, Giuseppe Freitas-Astua, Juliana Quetier, Francis Navarro, Luis Roose, Mikeal L. Wincker, Patrick Schmutz, Jeremy Morgante, Michele Machado, Marcos Antonio Talón, Manuel Jaillon, Olivier Ollitrault, Patrick Gmitter Jr., Frederick G. Rokhsar, Daniel S. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title | Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title_full | Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title_fullStr | Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title_full_unstemmed | Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title_short | Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| title_sort | sequencing of diverse mandarin pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| url | http://hdl.handle.net/20.500.11939/4773 |
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