High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate...
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| Format: | info:ar-repo/semantics/artículo |
| Language: | Inglés |
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Frontiers Media
2020
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full http://hdl.handle.net/20.500.12123/8365 https://doi.org/10.3389/fmicb.2020.553109 |
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| author | Bejerman, Nicolas Esteban Roumagnac, Philippe Nemchinov, Lev G. |
| author_browse | Bejerman, Nicolas Esteban Nemchinov, Lev G. Roumagnac, Philippe |
| author_facet | Bejerman, Nicolas Esteban Roumagnac, Philippe Nemchinov, Lev G. |
| author_sort | Bejerman, Nicolas Esteban |
| collection | INTA Digital |
| description | Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance,
although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and
the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the
assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens.
In this review, we will focus on viruses of alfalfa recently described in different laboratories
on the basis of the above research methodologies. |
| format | info:ar-repo/semantics/artículo |
| id | INTA8365 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | Frontiers Media |
| publisherStr | Frontiers Media |
| record_format | dspace |
| spelling | INTA83652020-12-02T14:17:26Z High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) Bejerman, Nicolas Esteban Roumagnac, Philippe Nemchinov, Lev G. Medicago Sativa Plantas Forrajeras Plant Viruses Feed Crops Virus de las Plantas Alfalfa Cultivo Forrajero Virome High Throughput Sequencing Emerging Viruses Lucerne Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the United States, it has recently become the third most valuable field crop, with an estimated value of over $9.3 billion. Alfalfa is naturally infected by many different pathogens, including viruses, obligate parasites that reproduce only inside living host cells. Traditionally, viral infections of alfalfa have been considered by breeders, growers, producers and researchers to be diseases of limited importance, although they are widespread in all major cultivation areas. However, over the past few years, due to the rapid development of high-throughput sequencing (HTS), viral metagenomics, bioinformatics tools for interpreting massive amounts of HTS data and the increasing accessibility of public data repositories for transcriptomic discoveries, several emerging viruses of alfalfa with the potential to cause serious yield losses have been described. They include alfalfa leaf curl virus (family Geminiviridae), alfalfa dwarf virus (family Rhabdoviridae), alfalfa enamovirus 1 (family Luteoviridae), alfalfa virus S (family Alphaflexiviridae) and others. These discoveries have called into question the assumed low economic impact of viral diseases in alfalfa and further suggested their possible contribution to the severity of complex infections involving multiple pathogens. In this review, we will focus on viruses of alfalfa recently described in different laboratories on the basis of the above research methodologies. Instituto de Patología Vegetal Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFYMA); Argentina Fil: Roumagnac, Philippe. CIRAD, BGPI. Montpellier; France. Université Montpellier. Institut Agro. BGPI, INRAE, CIRAD. Montpellier; Francia Fil: Nemchinov, Lev G. Plant Sciences Institute. Molecular Plant Pathology Laboratory; Estados Unidos 2020-12-02T14:00:32Z 2020-12-02T14:00:32Z 2020-09-11 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full http://hdl.handle.net/20.500.12123/8365 1664-302X https://doi.org/10.3389/fmicb.2020.553109 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf Frontiers Media Frontiers in Microbiology 11 : 553109. (2020) |
| spellingShingle | Medicago Sativa Plantas Forrajeras Plant Viruses Feed Crops Virus de las Plantas Alfalfa Cultivo Forrajero Virome High Throughput Sequencing Emerging Viruses Lucerne Bejerman, Nicolas Esteban Roumagnac, Philippe Nemchinov, Lev G. High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title | High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title_full | High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title_fullStr | High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title_full_unstemmed | High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title_short | High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) |
| title_sort | high throughput sequencing for deciphering the virome of alfalfa medicago sativa l |
| topic | Medicago Sativa Plantas Forrajeras Plant Viruses Feed Crops Virus de las Plantas Alfalfa Cultivo Forrajero Virome High Throughput Sequencing Emerging Viruses Lucerne |
| url | https://www.frontiersin.org/articles/10.3389/fmicb.2020.553109/full http://hdl.handle.net/20.500.12123/8365 https://doi.org/10.3389/fmicb.2020.553109 |
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