Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soy...
| Main Authors: | , , , , , , , , |
|---|---|
| Format: | info:ar-repo/semantics/artículo |
| Language: | Inglés |
| Published: |
Elsevier
2020
|
| Subjects: | |
| Online Access: | http://hdl.handle.net/20.500.12123/6638 https://www.sciencedirect.com/science/article/pii/S2352340919310480 https://doi.org/10.1016/j.dib.2019.104693 |
| _version_ | 1855035712101941248 |
|---|---|
| author | Sautua, Francisco José Gonzalez, Sergio Alberto Doyle, Vinson P. Berretta, Marcelo Facundo Gordó, Manuela Scandiani, María Mercedes Rivarola, Maximo Lisandro Fernandez, Paula Del Carmen Carmona, Marcelo Anibal |
| author_browse | Berretta, Marcelo Facundo Carmona, Marcelo Anibal Doyle, Vinson P. Fernandez, Paula Del Carmen Gonzalez, Sergio Alberto Gordó, Manuela Rivarola, Maximo Lisandro Sautua, Francisco José Scandiani, María Mercedes |
| author_facet | Sautua, Francisco José Gonzalez, Sergio Alberto Doyle, Vinson P. Berretta, Marcelo Facundo Gordó, Manuela Scandiani, María Mercedes Rivarola, Maximo Lisandro Fernandez, Paula Del Carmen Carmona, Marcelo Anibal |
| author_sort | Sautua, Francisco José |
| collection | INTA Digital |
| description | Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000. |
| format | info:ar-repo/semantics/artículo |
| id | INTA6638 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | INTA66382022-01-14T11:05:52Z Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans Sautua, Francisco José Gonzalez, Sergio Alberto Doyle, Vinson P. Berretta, Marcelo Facundo Gordó, Manuela Scandiani, María Mercedes Rivarola, Maximo Lisandro Fernandez, Paula Del Carmen Carmona, Marcelo Anibal Cercospora kikuchii Genomas Secuencia Nucleotídica Soja Bioinformática Genomes Nucleotide Sequence Soybeans Bioinformatics Phylogenetic Analyses Purple Seed Stain Análisis Filogenético Mancha Púrpura de la Semilla Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000. Instituto de Biotecnología Fil: Sautua, Francisco José. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina Fil: Gonzalez, Sergio Alberto. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Doyle, Vinson P. LSU AgCenter. Department of Plant Pathology and Crop Physiology; Estados Unidos Fil: Berretta, Marcelo Facundo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Microbiología y Zoología Agrícola; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Gordó, Manuela. Laboratorio Agrícola Río Parana; Argentina Fil: Scandiani, Mercedes M. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmac euticas. Centro de Referencia de Micología (CEREMIC); Argentina Fil: Rivarola, Maximo Lisandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Fernandez, Paula Del Carmen. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Carmona, Marcelo Anibal. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina 2020-01-08T17:54:04Z 2020-01-08T17:54:04Z 2019-10 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/6638 https://www.sciencedirect.com/science/article/pii/S2352340919310480 2352-3409 https://doi.org/10.1016/j.dib.2019.104693 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf Elsevier Data in brief 27: 104693 (Octubre 2019) |
| spellingShingle | Cercospora kikuchii Genomas Secuencia Nucleotídica Soja Bioinformática Genomes Nucleotide Sequence Soybeans Bioinformatics Phylogenetic Analyses Purple Seed Stain Análisis Filogenético Mancha Púrpura de la Semilla Sautua, Francisco José Gonzalez, Sergio Alberto Doyle, Vinson P. Berretta, Marcelo Facundo Gordó, Manuela Scandiani, María Mercedes Rivarola, Maximo Lisandro Fernandez, Paula Del Carmen Carmona, Marcelo Anibal Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title_full | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title_fullStr | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title_full_unstemmed | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title_short | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
| title_sort | draft genome sequence data of cercospora kikuchii a causal agent of cercospora leaf blight and purple seed stain of soybeans |
| topic | Cercospora kikuchii Genomas Secuencia Nucleotídica Soja Bioinformática Genomes Nucleotide Sequence Soybeans Bioinformatics Phylogenetic Analyses Purple Seed Stain Análisis Filogenético Mancha Púrpura de la Semilla |
| url | http://hdl.handle.net/20.500.12123/6638 https://www.sciencedirect.com/science/article/pii/S2352340919310480 https://doi.org/10.1016/j.dib.2019.104693 |
| work_keys_str_mv | AT sautuafranciscojose draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT gonzalezsergioalberto draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT doylevinsonp draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT berrettamarcelofacundo draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT gordomanuela draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT scandianimariamercedes draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT rivarolamaximolisandro draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT fernandezpauladelcarmen draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans AT carmonamarceloanibal draftgenomesequencedataofcercosporakikuchiiacausalagentofcercosporaleafblightandpurpleseedstainofsoybeans |