Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions
Traditional landraces or “criollo” tomatoes (Solanum lycopersicum L.) from Andean areas of Argentina, selected for their fruit quality, were analysed in this study. We explored the metabolome and transcriptome of the ripe fruit in nine landrace accessions representing the seven genetic groups and co...
| Autores principales: | , , , , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2019
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| Materias: | |
| Acceso en línea: | https://link.springer.com/article/10.1007%2Fs00425-019-03274-4 http://hdl.handle.net/20.500.12123/6016 https://doi.org/10.1007/s00425-019-03274-4 |
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| author | D’Angelo, Matilde Zanor, María Inés Burgos, Estanislao Asprelli, Pablo Diego Boggio, Silvana Beatriz Carrari, Fernando Peralta, Iris Edith Valle, Estela M. |
| author_browse | Asprelli, Pablo Diego Boggio, Silvana Beatriz Burgos, Estanislao Carrari, Fernando D’Angelo, Matilde Peralta, Iris Edith Valle, Estela M. Zanor, María Inés |
| author_facet | D’Angelo, Matilde Zanor, María Inés Burgos, Estanislao Asprelli, Pablo Diego Boggio, Silvana Beatriz Carrari, Fernando Peralta, Iris Edith Valle, Estela M. |
| author_sort | D’Angelo, Matilde |
| collection | INTA Digital |
| description | Traditional landraces or “criollo” tomatoes (Solanum lycopersicum L.) from Andean areas of Argentina, selected for their fruit quality, were analysed in this study. We explored the metabolome and transcriptome of the ripe fruit in nine landrace accessions representing the seven genetic groups and compared them to the mature fruit of the wild progenitor Solanum pimpinellifolium. The content of branched- (isoleucine and valine) and aromatic (phenylalanine and tryptophan) amino acids, citrate and sugars were significantly different in the fruit of several “criollo” tomatoes compared to S. pimpinellifolium. The transcriptomic profile of the ripe fruit showed several genes significantly and highly regulated in all varieties compared to S. pimpinellifolium, like genes encoding histones and mitochondrial proteins. Additionally, network analysis including transcripts and metabolites identified major hubs with the largest number of connections such as constitutive photomorphogenic protein 1 (a RING finger-type ubiquitin E3 ligase), five Zn finger transcription factors, ascorbate peroxidase, acetolactate synthase, and sucrose non-fermenting 1 kinase. Co-expression analysis of these genes revealed a potential function in acquiring tomato fruit quality during domestication. |
| format | Artículo |
| id | INTA6016 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2019 |
| publishDateRange | 2019 |
| publishDateSort | 2019 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | INTA60162019-09-30T13:26:58Z Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions D’Angelo, Matilde Zanor, María Inés Burgos, Estanislao Asprelli, Pablo Diego Boggio, Silvana Beatriz Carrari, Fernando Peralta, Iris Edith Valle, Estela M. Tomate Solanum Lycopersicum Variedades Aminoácidos Genética Mitocondria Tomatoes Varieties Amino Acids Genetics Mitochondria Tomate Andino Traditional landraces or “criollo” tomatoes (Solanum lycopersicum L.) from Andean areas of Argentina, selected for their fruit quality, were analysed in this study. We explored the metabolome and transcriptome of the ripe fruit in nine landrace accessions representing the seven genetic groups and compared them to the mature fruit of the wild progenitor Solanum pimpinellifolium. The content of branched- (isoleucine and valine) and aromatic (phenylalanine and tryptophan) amino acids, citrate and sugars were significantly different in the fruit of several “criollo” tomatoes compared to S. pimpinellifolium. The transcriptomic profile of the ripe fruit showed several genes significantly and highly regulated in all varieties compared to S. pimpinellifolium, like genes encoding histones and mitochondrial proteins. Additionally, network analysis including transcripts and metabolites identified major hubs with the largest number of connections such as constitutive photomorphogenic protein 1 (a RING finger-type ubiquitin E3 ligase), five Zn finger transcription factors, ascorbate peroxidase, acetolactate synthase, and sucrose non-fermenting 1 kinase. Co-expression analysis of these genes revealed a potential function in acquiring tomato fruit quality during domestication. EEA La Consulta Fil: D'Angelo, Matilde. Universidad Nacional de Rosario. Instituto de Biología Molecular y Celular de Rosario; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universitat Autónoma de Barcelona. Animal and Food Science Department. Animal Nutrition and Welfare Service; España Fil: Zanor, María Inés. Universidad Nacional de Rosario. Instituto de Biología Molecular y Celular de Rosario; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Burgos, Estanislao. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Fil: Asprelli, Pablo. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; Argentina. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria La Consulta; Argentina Fil: Boggio, Silvana Beatriz. Universidad Nacional de Rosario. Instituto de Biología Molecular y Celular de Rosario; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina. Fil: Peralta, Iris Edith. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Mendoza. Instituto Argentino de Investigaciones de Zonas Aridas; Argentina. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; Argentina Fil: Valle, Estela M. Universidad Nacional de Rosario. Instituto de Biología Molecular y Celular de Rosario; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina 2019-09-30T13:24:57Z 2019-09-30T13:24:57Z 2019-09-16 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion https://link.springer.com/article/10.1007%2Fs00425-019-03274-4 http://hdl.handle.net/20.500.12123/6016 0032-0935 1432-2048 https://doi.org/10.1007/s00425-019-03274-4 eng info:eu-repo/semantics/restrictedAccess application/pdf Springer Planta : 1–14 (First Online: 16 September 2019) |
| spellingShingle | Tomate Solanum Lycopersicum Variedades Aminoácidos Genética Mitocondria Tomatoes Varieties Amino Acids Genetics Mitochondria Tomate Andino D’Angelo, Matilde Zanor, María Inés Burgos, Estanislao Asprelli, Pablo Diego Boggio, Silvana Beatriz Carrari, Fernando Peralta, Iris Edith Valle, Estela M. Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title | Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title_full | Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title_fullStr | Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title_full_unstemmed | Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title_short | Fruit metabolic and transcriptional programs differentiate among Andean tomato (Solanum lycopersicum L.) accessions |
| title_sort | fruit metabolic and transcriptional programs differentiate among andean tomato solanum lycopersicum l accessions |
| topic | Tomate Solanum Lycopersicum Variedades Aminoácidos Genética Mitocondria Tomatoes Varieties Amino Acids Genetics Mitochondria Tomate Andino |
| url | https://link.springer.com/article/10.1007%2Fs00425-019-03274-4 http://hdl.handle.net/20.500.12123/6016 https://doi.org/10.1007/s00425-019-03274-4 |
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