Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly...
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| Format: | Artículo |
| Language: | Inglés |
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Springer
2018
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| Online Access: | http://hdl.handle.net/20.500.12123/3624 https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas https://doi.org/10.1007/s00705-018-3910-y |
| _version_ | 1855483273300410368 |
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| author | Bejerman, Nicolas Esteban De Breuil, Soledad Nome Docampo, Claudia |
| author_browse | Bejerman, Nicolas Esteban De Breuil, Soledad Nome Docampo, Claudia |
| author_facet | Bejerman, Nicolas Esteban De Breuil, Soledad Nome Docampo, Claudia |
| author_sort | Bejerman, Nicolas Esteban |
| collection | INTA Digital |
| description | A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family. |
| format | Artículo |
| id | INTA3624 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2018 |
| publishDateRange | 2018 |
| publishDateSort | 2018 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | INTA36242018-10-18T12:50:28Z Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina Bejerman, Nicolas Esteban De Breuil, Soledad Nome Docampo, Claudia Mate ADN Virus de las Plantas Virosis Genética Molecular Identificación DNA Plant Viruses Molecular Genetics Identification Argentina Virus de ADN Circular Circular DNA Virus Single-stranded DNA Virus ssDNA Virus A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family. Instituto de Patología Vegetal Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: De Breuil, Soledad. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Nome Docampo, Claudia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina 2018-10-18T12:45:24Z 2018-10-18T12:45:24Z 2018-10 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/3624 https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas 0304-8608 1432-8798 (Online) https://doi.org/10.1007/s00705-018-3910-y eng info:eu-repo/semantics/restrictedAccess application/pdf Argentina (nation) Springer Archives of virology 163 (10) : 2811–2815. (October 2018) |
| spellingShingle | Mate ADN Virus de las Plantas Virosis Genética Molecular Identificación DNA Plant Viruses Molecular Genetics Identification Argentina Virus de ADN Circular Circular DNA Virus Single-stranded DNA Virus ssDNA Virus Bejerman, Nicolas Esteban De Breuil, Soledad Nome Docampo, Claudia Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title | Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title_full | Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title_fullStr | Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title_full_unstemmed | Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title_short | Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina |
| title_sort | identification and molecular characterization of a novel circular single stranded dna virus associated with yerba mate in argentina |
| topic | Mate ADN Virus de las Plantas Virosis Genética Molecular Identificación DNA Plant Viruses Molecular Genetics Identification Argentina Virus de ADN Circular Circular DNA Virus Single-stranded DNA Virus ssDNA Virus |
| url | http://hdl.handle.net/20.500.12123/3624 https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas https://doi.org/10.1007/s00705-018-3910-y |
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