Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum
Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain...
| Autores principales: | , , , |
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| Formato: | info:ar-repo/semantics/artículo |
| Lenguaje: | Inglés |
| Publicado: |
Springer Netherlands
2018
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| Materias: | |
| Acceso en línea: | https://link.springer.com/article/10.1007/s12230-016-9525-5 http://hdl.handle.net/20.500.12123/3232 https://doi.org/10.1007/s12230-016-9525-5 |
| _version_ | 1855035107177398272 |
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| author | Norero, Natalia Sigrid Castellote, Martín Alfredo de la Canal, Laura Feingold, Sergio Enrique |
| author_browse | Castellote, Martín Alfredo Feingold, Sergio Enrique Norero, Natalia Sigrid de la Canal, Laura |
| author_facet | Norero, Natalia Sigrid Castellote, Martín Alfredo de la Canal, Laura Feingold, Sergio Enrique |
| author_sort | Norero, Natalia Sigrid |
| collection | INTA Digital |
| description | Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato. |
| format | info:ar-repo/semantics/artículo |
| id | INTA3232 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2018 |
| publishDateRange | 2018 |
| publishDateSort | 2018 |
| publisher | Springer Netherlands |
| publisherStr | Springer Netherlands |
| record_format | dspace |
| spelling | INTA32322018-08-29T13:24:43Z Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum Norero, Natalia Sigrid Castellote, Martín Alfredo de la Canal, Laura Feingold, Sergio Enrique Serina Papa Solanun tuberosum Phytophthora infestans Genes Serine Potatoes Plant subtilisin-like serine proteases or subtilases constitute a large expanded gene subfamily in potato. We identified 82 potato subtilases encoded by 74 genes. All subtilases present a characteristic S08 domain, and the majority of them have an association protein domain, an inhibition_I9 domain and a signal peptide that consists of a signal sequence for targeting to the secretory pathway. Phylogenetic studies revealed five subtilase groups named StSBT1 to StSBT5. A genome expansion of potato subtilase subfamily was reflected in two phylogenetic clusters, StSBT1 and StSBT4 both characterized by intronless genes in tandem arrays mainly in chromosome I and VIII. Twenty nine of the identified subtilases co-localize with six out of 24 metaQTLs related to late blight resistance previously described in potato. These metaQTLs includes subtilase genes up regulated in detached potato leaves inoculated with P. infestans, some of which are homologous to p69 subtilases genes from tomato. EEA Balcarce Fil: Norero, Natalia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina Fil: Castellote, Martín. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina Fil: de la Canal, Laura. Universidad Nacional de Mar del Plata. Instituto de Investigaciones Biológicas; Argentina Fil: Feingold, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina 2018-08-29T13:15:19Z 2018-08-29T13:15:19Z 2016-10 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion https://link.springer.com/article/10.1007/s12230-016-9525-5 http://hdl.handle.net/20.500.12123/3232 1099-209X 1874-9380 https://doi.org/10.1007/s12230-016-9525-5 eng info:eu-repo/semantics/restrictedAccess application/pdf Springer Netherlands American Journal of Potato Research 93 (5) : 485-496 (2016) |
| spellingShingle | Serina Papa Solanun tuberosum Phytophthora infestans Genes Serine Potatoes Norero, Natalia Sigrid Castellote, Martín Alfredo de la Canal, Laura Feingold, Sergio Enrique Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title | Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title_full | Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title_fullStr | Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title_full_unstemmed | Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title_short | Genome-Wide Analyses of Subtilisin-Like Serine Proteases on Solanum tuberosum |
| title_sort | genome wide analyses of subtilisin like serine proteases on solanum tuberosum |
| topic | Serina Papa Solanun tuberosum Phytophthora infestans Genes Serine Potatoes |
| url | https://link.springer.com/article/10.1007/s12230-016-9525-5 http://hdl.handle.net/20.500.12123/3232 https://doi.org/10.1007/s12230-016-9525-5 |
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