Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx)
Cannabis sativa L. is a globally cultivated plant with significant industrial, nutritional, and medicinal value. Its genome, comprising nine autosomes and sex chromosomes (X and Y), has been extensively studied, particularly in the context of precise breeding for specific enduses. Recent advances ha...
| Autores principales: | , , , , , , |
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| Formato: | info:ar-repo/semantics/artículo |
| Lenguaje: | Inglés |
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MDPI
2025
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.12123/21842 https://www.mdpi.com/2037-0164/16/2/40 https://doi.org/10.3390/ijpb16020040 |
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| author | Quiroga, Mariana Paola Crociara, Clara Sonia Schenfeld, Esteban Martín Fernandez, Franco Daniel Crescente, Juan Manuel Vanzetti, Leonardo Sebastian Helguera, Marcelo |
| author_browse | Crescente, Juan Manuel Crociara, Clara Sonia Fernandez, Franco Daniel Helguera, Marcelo Quiroga, Mariana Paola Schenfeld, Esteban Martín Vanzetti, Leonardo Sebastian |
| author_facet | Quiroga, Mariana Paola Crociara, Clara Sonia Schenfeld, Esteban Martín Fernandez, Franco Daniel Crescente, Juan Manuel Vanzetti, Leonardo Sebastian Helguera, Marcelo |
| author_sort | Quiroga, Mariana Paola |
| collection | INTA Digital |
| description | Cannabis sativa L. is a globally cultivated plant with significant industrial, nutritional, and medicinal value. Its genome, comprising nine autosomes and sex chromosomes (X and Y), has been extensively studied, particularly in the context of precise breeding for specific enduses. Recent advances have facilitated genome-wide analyses through platforms like the NCBI Comparative Genome Viewer (CGV) and CannabisGDB, among others, enabling comparative studies across multiple Cannabis genotypes. Despite the abundance of genomic data, a particular group of transposable elements, known as miniature inverted-repeat transposable elements (MITEs), remains underexplored in Cannabis. These elements are non-autonomous class II DNA transposons characterized by high copy numbers and insertion preference in non-coding regions, potentially affecting gene expression. In the present study, we report the sequence annotation of MITEs in wild-type and domesticated Cannabis genomes obtained using the MITE Tracker software. We also develop a simple and innovative protocol to identify genome-specific MITE families, offering valuable tools for future research on marker development focused on important genetic variation for breeding in Cannabis sativa. |
| format | info:ar-repo/semantics/artículo |
| id | INTA21842 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | INTA218422025-03-27T16:25:22Z Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) Quiroga, Mariana Paola Crociara, Clara Sonia Schenfeld, Esteban Martín Fernandez, Franco Daniel Crescente, Juan Manuel Vanzetti, Leonardo Sebastian Helguera, Marcelo Cannabis Mites Ácaro Cannabis sativa MITEs Wild and Domesticated Genomes Cannabis sativa L. is a globally cultivated plant with significant industrial, nutritional, and medicinal value. Its genome, comprising nine autosomes and sex chromosomes (X and Y), has been extensively studied, particularly in the context of precise breeding for specific enduses. Recent advances have facilitated genome-wide analyses through platforms like the NCBI Comparative Genome Viewer (CGV) and CannabisGDB, among others, enabling comparative studies across multiple Cannabis genotypes. Despite the abundance of genomic data, a particular group of transposable elements, known as miniature inverted-repeat transposable elements (MITEs), remains underexplored in Cannabis. These elements are non-autonomous class II DNA transposons characterized by high copy numbers and insertion preference in non-coding regions, potentially affecting gene expression. In the present study, we report the sequence annotation of MITEs in wild-type and domesticated Cannabis genomes obtained using the MITE Tracker software. We also develop a simple and innovative protocol to identify genome-specific MITE families, offering valuable tools for future research on marker development focused on important genetic variation for breeding in Cannabis sativa. Instituto de Fisiología y Recursos Genéticos Vegetales Fil:Quiroga, Mariana Paola. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina Fil:Quiroga, Mariana Paola. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Estudios Agropecuarios (UDEA); Argentina Fil: Crociara, Clara Sonia. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Estudios Agropecuarios (UDEA); Argentina Fil: Crociara, Clara Sonia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina Fil: Schenfeld, Esteban Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Estudios Agropecuarios (UDEA); Argentina Fil: Schenfeld, Esteban Martín.Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina Fil: Fernandez, Franco Daniel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Fernandez, Franco Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Crescente, Juan Manuel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina Fil: Crescente, Juan Manuel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Vanzetti, Leonardo Sebastian. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Marcos Juárez; Argentina Fil: Vanzetti, Leonardo Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Helguera, Marcelo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina Fil: Helguera, Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Estudios Agropecuarios (UDEA); Argentina 2025-03-27T16:08:01Z 2025-03-27T16:08:01Z 2025-03-25 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/21842 https://www.mdpi.com/2037-0164/16/2/40 2037-0156 2037-0164 https://doi.org/10.3390/ijpb16020040 eng info:eu-repograntAgreement/INTA/2019-PT-E6-I512-001, Plataforma de mejoramiento vegetal info:eu-repograntAgreement/INTA/2023-PD-L01-I071, Mejoramiento genético de los Cultivos Industriales y estrategias alternativas para la obtención de biotipos adaptados a los nuevos escenarios y al cambio climático info:eu-repograntAgreement/INTA/2023-PD-L03-I084, Estreses bióticos y abióticos en plantas. Estudios fisiológicos y patológicos para el diseño de estrategias de mejoramiento y manejo info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf MDPI International Journal of Plant Biology 16 (2) : 40 (March 2025) |
| spellingShingle | Cannabis Mites Ácaro Cannabis sativa MITEs Wild and Domesticated Genomes Quiroga, Mariana Paola Crociara, Clara Sonia Schenfeld, Esteban Martín Fernandez, Franco Daniel Crescente, Juan Manuel Vanzetti, Leonardo Sebastian Helguera, Marcelo Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title | Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title_full | Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title_fullStr | Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title_full_unstemmed | Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title_short | Cannabis sativa L. Miniature Inverted-Repeat Transposable- Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx) |
| title_sort | cannabis sativa l miniature inverted repeat transposable element landscapes in wild type jl and domesticated genome cbdrx |
| topic | Cannabis Mites Ácaro Cannabis sativa MITEs Wild and Domesticated Genomes |
| url | http://hdl.handle.net/20.500.12123/21842 https://www.mdpi.com/2037-0164/16/2/40 https://doi.org/10.3390/ijpb16020040 |
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