Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses
Bovine viral diarrhea virus (BVDV) genome consists of a single-stranded, positive-sense RNA with high genetic diversity. In the last years, significant progress has been achieved in BVDV knowledge evolution through phylodynamic analysis based on the partial 5′UTR sequences, whereas a few studies hav...
| Autores principales: | , , , , |
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| Formato: | Artículo |
| Lenguaje: | Inglés |
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Springer
2024
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| Acceso en línea: | http://hdl.handle.net/20.500.12123/17684 https://link.springer.com/article/10.1007/s42770-023-00986-4 https://doi.org/10.1007/s42770-023-00986-4 |
| _version_ | 1855486009914949632 |
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| author | Spetter, Lucas Maximiliano Louge Uriarte, Enrique Leopoldo Verna, Andrea Elizabeth Odeon, Anselmo Carlos González Altamiranda, Erika |
| author_browse | González Altamiranda, Erika Louge Uriarte, Enrique Leopoldo Odeon, Anselmo Carlos Spetter, Lucas Maximiliano Verna, Andrea Elizabeth |
| author_facet | Spetter, Lucas Maximiliano Louge Uriarte, Enrique Leopoldo Verna, Andrea Elizabeth Odeon, Anselmo Carlos González Altamiranda, Erika |
| author_sort | Spetter, Lucas Maximiliano |
| collection | INTA Digital |
| description | Bovine viral diarrhea virus (BVDV) genome consists of a single-stranded, positive-sense RNA with high genetic diversity. In the last years, significant progress has been achieved in BVDV knowledge evolution through phylodynamic analysis based on the partial 5′UTR sequences, whereas a few studies have used other genes or the complete coding sequence (CDS). However, no research has evaluated and compared BVDV evolutionary history based on the complete genome (CG), CDS, and individual genes. In this study, phylodynamic analyses were carried out with BVDV-1 (Pestivirus A) and BVDV-2 (Pestivirus B) CG sequences available on the GenBank database and each genomic region: CDS, UTRs, and individual genes. In comparison to the CG, the estimations for both BVDV species varied according to the dataset used, pointing out the importance of considering the analyzed genomic region when concluding. This study may provide new insight into BVDV evolution history while highlighting the need to increase the available BVDV CG sequences to perform more comprehensive phylodynamic studies in the future. |
| format | Artículo |
| id | INTA17684 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | INTA176842024-05-09T14:04:35Z Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses Spetter, Lucas Maximiliano Louge Uriarte, Enrique Leopoldo Verna, Andrea Elizabeth Odeon, Anselmo Carlos González Altamiranda, Erika Diarrea Viral Bovina Virus Peste Bovina Genomas Bovine Viral Diarrhoea Rinderpestevirus Genomes Bovine viral diarrhea virus (BVDV) genome consists of a single-stranded, positive-sense RNA with high genetic diversity. In the last years, significant progress has been achieved in BVDV knowledge evolution through phylodynamic analysis based on the partial 5′UTR sequences, whereas a few studies have used other genes or the complete coding sequence (CDS). However, no research has evaluated and compared BVDV evolutionary history based on the complete genome (CG), CDS, and individual genes. In this study, phylodynamic analyses were carried out with BVDV-1 (Pestivirus A) and BVDV-2 (Pestivirus B) CG sequences available on the GenBank database and each genomic region: CDS, UTRs, and individual genes. In comparison to the CG, the estimations for both BVDV species varied according to the dataset used, pointing out the importance of considering the analyzed genomic region when concluding. This study may provide new insight into BVDV evolution history while highlighting the need to increase the available BVDV CG sequences to perform more comprehensive phylodynamic studies in the future. EEA Balcarce Fil: Spetter Lucas, Maximiliano Joaquín. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Comisión de Investigaciones Científicas; Arentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Centro de Investigación Veterinaria de Tandil; Argentina Fil: Louge Uriarte, Enrique Leopoldo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible; Argentina Fil: Verna, Andrea Elizabeth. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible; Argentina Fil: Odeón, Anselmo Carlos. Universidad Nacional de Mar del Plata. Facultad de Ciencias Agrarias; Argentina Fil: González Altamiranda, Erika Analia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible; Argentina 2024-05-09T13:41:19Z 2024-05-09T13:41:19Z 2023-05-23 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/17684 https://link.springer.com/article/10.1007/s42770-023-00986-4 1517-8382(Print) 1678-4405 (Online) https://doi.org/10.1007/s42770-023-00986-4 eng info:eu-repo/semantics/restrictedAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf Springer Brazilian Journal of Microbiology 54 : 2461-2469. (May 2023) |
| spellingShingle | Diarrea Viral Bovina Virus Peste Bovina Genomas Bovine Viral Diarrhoea Rinderpestevirus Genomes Spetter, Lucas Maximiliano Louge Uriarte, Enrique Leopoldo Verna, Andrea Elizabeth Odeon, Anselmo Carlos González Altamiranda, Erika Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title | Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title_full | Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title_fullStr | Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title_full_unstemmed | Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title_short | Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| title_sort | genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses |
| topic | Diarrea Viral Bovina Virus Peste Bovina Genomas Bovine Viral Diarrhoea Rinderpestevirus Genomes |
| url | http://hdl.handle.net/20.500.12123/17684 https://link.springer.com/article/10.1007/s42770-023-00986-4 https://doi.org/10.1007/s42770-023-00986-4 |
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