Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species
Planting tested forest reproductive material is crucial to ensure the increased resilience of intensively managed productive stands for timber and wood product markets under climate change scenarios. Single-step Genomic Best Linear Unbiased Prediction (ssGBLUP) analysis is a cost-effective option fo...
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| Format: | info:ar-repo/semantics/artículo |
| Language: | Inglés |
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BMC
2024
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| Online Access: | http://hdl.handle.net/20.500.12123/17250 https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-023-09907-z https://doi.org/10.1186/s12864-023-09907-z |
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| author | Ousmael, Kedra M. Cappa, Eduardo Pablo Hansen, Jon K. Hendre, Prasad Hansen, Ole K. |
| author_browse | Cappa, Eduardo Pablo Hansen, Jon K. Hansen, Ole K. Hendre, Prasad Ousmael, Kedra M. |
| author_facet | Ousmael, Kedra M. Cappa, Eduardo Pablo Hansen, Jon K. Hendre, Prasad Hansen, Ole K. |
| author_sort | Ousmael, Kedra M. |
| collection | INTA Digital |
| description | Planting tested forest reproductive material is crucial to ensure the increased resilience of intensively managed productive stands for timber and wood product markets under climate change scenarios. Single-step Genomic Best Linear Unbiased Prediction (ssGBLUP) analysis is a cost-effective option for using genomic tools to enhance the accuracy of predicted breeding values and genetic parameter estimation in forest tree species. Here, we tested the efficiency of ssGBLUP in a tropical multipurpose tree species, Cordia africana, by partial population genotyping. A total of 8070 trees from three breeding seedling orchards (BSOs) were phenotyped for height. We genotyped 6.1% of the phenotyped individuals with 4373 single nucleotide polymorphisms. The results of ssGBLUP were
compared with pedigree-based best linear unbiased prediction (ABLUP) and genomic best linear unbiased prediction (GBLUP), based on genetic parameters, theoretical accuracy of breeding values, selection candidate ranking, genetic gain, and predictive accuracy and prediction bias. |
| format | info:ar-repo/semantics/artículo |
| id | INTA17250 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| publisher | BMC |
| publisherStr | BMC |
| record_format | dspace |
| spelling | INTA172502024-03-27T18:06:22Z Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species Ousmael, Kedra M. Cappa, Eduardo Pablo Hansen, Jon K. Hendre, Prasad Hansen, Ole K. Quantitative Genetics Genética Cuantitativa Cordia Single Step GBLUP Quantitative Genetics Parameters Tropical Tree Breeding Genetic Management BLUP de un Solo Paso Parámetros Genéticos Cuantitativos Cordia africana Cría de Arboles Tropicales Manejo Genético Planting tested forest reproductive material is crucial to ensure the increased resilience of intensively managed productive stands for timber and wood product markets under climate change scenarios. Single-step Genomic Best Linear Unbiased Prediction (ssGBLUP) analysis is a cost-effective option for using genomic tools to enhance the accuracy of predicted breeding values and genetic parameter estimation in forest tree species. Here, we tested the efficiency of ssGBLUP in a tropical multipurpose tree species, Cordia africana, by partial population genotyping. A total of 8070 trees from three breeding seedling orchards (BSOs) were phenotyped for height. We genotyped 6.1% of the phenotyped individuals with 4373 single nucleotide polymorphisms. The results of ssGBLUP were compared with pedigree-based best linear unbiased prediction (ABLUP) and genomic best linear unbiased prediction (GBLUP), based on genetic parameters, theoretical accuracy of breeding values, selection candidate ranking, genetic gain, and predictive accuracy and prediction bias. Instituto de Recursos Biológicos Fil: Ousmael, Kedra M. University of Copenhagen. Department of Geosciences and Natural Resource Management, Dinamarca Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Hansen, Jon K. University of Copenhagen. Department of Geosciences and Natural Resource Management, Dinamarca Fil: Hendre, Prasad. Naciones Unidas. World Agroforestry Centre (ICRAF); Kenia Fil: Hansen, Ole K. University of Copenhagen. Department of Geosciences and Natural Resource Management, Dinamarca 2024-03-27T17:57:24Z 2024-03-27T17:57:24Z 2024-01-02 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/17250 https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-023-09907-z 1471-2164 https://doi.org/10.1186/s12864-023-09907-z eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf BMC BMC Genomics 25 : Article number: 9 (2024) |
| spellingShingle | Quantitative Genetics Genética Cuantitativa Cordia Single Step GBLUP Quantitative Genetics Parameters Tropical Tree Breeding Genetic Management BLUP de un Solo Paso Parámetros Genéticos Cuantitativos Cordia africana Cría de Arboles Tropicales Manejo Genético Ousmael, Kedra M. Cappa, Eduardo Pablo Hansen, Jon K. Hendre, Prasad Hansen, Ole K. Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title | Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title_full | Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title_fullStr | Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title_full_unstemmed | Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title_short | Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species |
| title_sort | genomic evaluation for breeding and genetic management in cordia africana a multipurpose tropical tree species |
| topic | Quantitative Genetics Genética Cuantitativa Cordia Single Step GBLUP Quantitative Genetics Parameters Tropical Tree Breeding Genetic Management BLUP de un Solo Paso Parámetros Genéticos Cuantitativos Cordia africana Cría de Arboles Tropicales Manejo Genético |
| url | http://hdl.handle.net/20.500.12123/17250 https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-023-09907-z https://doi.org/10.1186/s12864-023-09907-z |
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