Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate...
| Autores principales: | , , , , , , , , , |
|---|---|
| Formato: | Artículo |
| Lenguaje: | Inglés |
| Publicado: |
BioRxiv
2023
|
| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.12123/14901 https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1 https://doi.org/10.1101/2023.04.28.538677 |
| _version_ | 1855485452307398656 |
|---|---|
| author | Sekely, Jill Marchelli, Paula Arana, María Veronica Dauphin, Benjamin Mattera, Maria Gabriela Pastorino, Mario Juan Scotti, Ivan Soliani, Carolina Heer, Katrin Opgenoorth, Lars |
| author_browse | Arana, María Veronica Dauphin, Benjamin Heer, Katrin Marchelli, Paula Mattera, Maria Gabriela Opgenoorth, Lars Pastorino, Mario Juan Scotti, Ivan Sekely, Jill Soliani, Carolina |
| author_facet | Sekely, Jill Marchelli, Paula Arana, María Veronica Dauphin, Benjamin Mattera, Maria Gabriela Pastorino, Mario Juan Scotti, Ivan Soliani, Carolina Heer, Katrin Opgenoorth, Lars |
| author_sort | Sekely, Jill |
| collection | INTA Digital |
| description | Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential. |
| format | Artículo |
| id | INTA14901 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | BioRxiv |
| publisherStr | BioRxiv |
| record_format | dspace |
| spelling | INTA149012023-08-10T18:11:55Z Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio Sekely, Jill Marchelli, Paula Arana, María Veronica Dauphin, Benjamin Mattera, Maria Gabriela Pastorino, Mario Juan Scotti, Ivan Soliani, Carolina Heer, Katrin Opgenoorth, Lars Nothofagus pumilio Cambio Climático Temperatura Factores Ambientales Genética Fotoperiodismo Climate Change Temperature Environmental Factors Genetics Day Length Lenga Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential. EEA Bariloche Fil: Sekely, Jill. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania Fil: Sekely, Jill. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania Fil: Marchelli, Paula. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Marchelli, Paula. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Arana, María Veronica. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Arana, María Veronica. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Dauphin, Benjamin. Swiss Federal Research Institute WSL; Suiza Fil: Mattera, Maria Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Mattera, Maria Gabriela. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Pastorino, Mario Juan. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Pastorino, Mario Juan. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Scotti, Ivan. URFM. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE); Francia Fil: Soliani, Carolina. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Soliani, Carolina. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina Fil: Heer, Katrin. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania Fil: Opgenoorth, Lars. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania Fil: Opgenoorth, Lars. Swiss Federal Research Institute WSL; Suiza 2023-08-10T17:51:36Z 2023-08-10T17:51:36Z 2023-04-29 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/submittedVersion http://hdl.handle.net/20.500.12123/14901 https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1 https://doi.org/10.1101/2023.04.28.538677 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf BioRxiv BioRxiv : the preprint server for biology (April 29, 2023) |
| spellingShingle | Nothofagus pumilio Cambio Climático Temperatura Factores Ambientales Genética Fotoperiodismo Climate Change Temperature Environmental Factors Genetics Day Length Lenga Sekely, Jill Marchelli, Paula Arana, María Veronica Dauphin, Benjamin Mattera, Maria Gabriela Pastorino, Mario Juan Scotti, Ivan Soliani, Carolina Heer, Katrin Opgenoorth, Lars Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title | Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title_full | Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title_fullStr | Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title_full_unstemmed | Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title_short | Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio |
| title_sort | temperature and day length drive local adaptation in the patagonian foundation tree species nothofagus pumilio |
| topic | Nothofagus pumilio Cambio Climático Temperatura Factores Ambientales Genética Fotoperiodismo Climate Change Temperature Environmental Factors Genetics Day Length Lenga |
| url | http://hdl.handle.net/20.500.12123/14901 https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1 https://doi.org/10.1101/2023.04.28.538677 |
| work_keys_str_mv | AT sekelyjill temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT marchellipaula temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT aranamariaveronica temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT dauphinbenjamin temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT matteramariagabriela temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT pastorinomariojuan temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT scottiivan temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT solianicarolina temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT heerkatrin temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio AT opgenoorthlars temperatureanddaylengthdrivelocaladaptationinthepatagonianfoundationtreespeciesnothofaguspumilio |