First draft genome of Thecaphora frezii, causal agent of peanut smut disease
Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The...
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| Format: | Artículo |
| Language: | Inglés |
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BMC
2023
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| Online Access: | http://hdl.handle.net/20.500.12123/14183 https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w https://doi.org/10.1186/s12863-023-01113-w |
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| author | Arias, Renee S. Conforto, Erica Cinthia Orner, Valerie A. Carloni, Edgardo José Soave, Juan H. Massa, Alicia N. Lamb, Marshall C. Bernanrdi Lima, Nelson Rago, Alejandro Mario |
| author_browse | Arias, Renee S. Bernanrdi Lima, Nelson Carloni, Edgardo José Conforto, Erica Cinthia Lamb, Marshall C. Massa, Alicia N. Orner, Valerie A. Rago, Alejandro Mario Soave, Juan H. |
| author_facet | Arias, Renee S. Conforto, Erica Cinthia Orner, Valerie A. Carloni, Edgardo José Soave, Juan H. Massa, Alicia N. Lamb, Marshall C. Bernanrdi Lima, Nelson Rago, Alejandro Mario |
| author_sort | Arias, Renee S. |
| collection | INTA Digital |
| description | Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance.
Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10. |
| format | Artículo |
| id | INTA14183 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | BMC |
| publisherStr | BMC |
| record_format | dspace |
| spelling | INTA141832023-03-09T10:26:53Z First draft genome of Thecaphora frezii, causal agent of peanut smut disease Arias, Renee S. Conforto, Erica Cinthia Orner, Valerie A. Carloni, Edgardo José Soave, Juan H. Massa, Alicia N. Lamb, Marshall C. Bernanrdi Lima, Nelson Rago, Alejandro Mario Genomes Pathogens Groundnuts Fungi Smuts Genomas Organismos Patógenos Cacahuete Hongos Carbones PacBio Smut Disease Maní Thecaphora Frezii Objectives: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. Data description: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10. Instituto de Patología Vegetal Fil: Arias, Renee S. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos Fil: Conforto, Erica Cinthia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Conforto, Erica Cinthia. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Orner, Valerie A. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos Fil: Carloni, Edgardo José. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Fisiología y Recursos Genéticos Vegetales; Argentina Fil: Soave, Juan H. El Carmen S.A.; Argentina Fil: Massa, Alicia N. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos Fil: Lamb, Marshall C. USDA-ARS National Peanut Research Laboratory (NPRL); Estados Unidos Fil: Bernanrdi Lima, Nelson. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Bernanrdi Lima, Nelson. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Rago, Alejandro Mario. Instituto Nacional de Tecnología Agropecuaria (INTA). Centro de Investigaciones Agropecuarias (CIAP); Argentina Fil: Rago, Alejandro Mario. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina 2023-03-09T10:18:51Z 2023-03-09T10:18:51Z 2023-02-16 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/14183 https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w 2730-6844 (online) https://doi.org/10.1186/s12863-023-01113-w eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf BMC BMC Genom Data 24 : 9 (Published: 16 February 2023) |
| spellingShingle | Genomes Pathogens Groundnuts Fungi Smuts Genomas Organismos Patógenos Cacahuete Hongos Carbones PacBio Smut Disease Maní Thecaphora Frezii Arias, Renee S. Conforto, Erica Cinthia Orner, Valerie A. Carloni, Edgardo José Soave, Juan H. Massa, Alicia N. Lamb, Marshall C. Bernanrdi Lima, Nelson Rago, Alejandro Mario First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title | First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title_full | First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title_fullStr | First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title_full_unstemmed | First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title_short | First draft genome of Thecaphora frezii, causal agent of peanut smut disease |
| title_sort | first draft genome of thecaphora frezii causal agent of peanut smut disease |
| topic | Genomes Pathogens Groundnuts Fungi Smuts Genomas Organismos Patógenos Cacahuete Hongos Carbones PacBio Smut Disease Maní Thecaphora Frezii |
| url | http://hdl.handle.net/20.500.12123/14183 https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-023-01113-w https://doi.org/10.1186/s12863-023-01113-w |
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