The genetic architecture of photosynthesis and plant growthrelated traits in tomato
To identify genomic regions involved in the regulation of fundamental physiological processes such as photosynthesis and respiration, a population of Solanum pennellii introgression lines was analyzed. We determined phenotypes for physiological, metabolic, and growth related traits, including gas ex...
| Main Authors: | , , , , , , , , , , , , , , , , , |
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| Format: | Artículo |
| Language: | Inglés |
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Wiley
2022
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| Subjects: | |
| Online Access: | http://hdl.handle.net/20.500.12123/12338 https://onlinelibrary.wiley.com/doi/10.1111/pce.13084 https://doi.org/10.1111/pce.13084 |
| _version_ | 1855484954161446912 |
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| author | Oliveira Silva, Franklin Magnum de Lichtenstein, Gabriel Alseekh, Saleh Rosado‐Souza, Laise Conte, Mariana Fuentes Suguiyama, Vanessa Lira, Bruno Silvestre Fanourakis, Dimitrios Usadel, Björn Lopes Bhering, Leonardo DaMatta, Fábio M. Sulpice, Ronan Araújo, Wagner L. Rossi, Magdalena de Setta, Nathalia Fernie, Alisdair R. Carrari, Fernando Nunes Nesi, Adriano |
| author_browse | Alseekh, Saleh Araújo, Wagner L. Carrari, Fernando Conte, Mariana DaMatta, Fábio M. Fanourakis, Dimitrios Fernie, Alisdair R. Fuentes Suguiyama, Vanessa Lichtenstein, Gabriel Lira, Bruno Silvestre Lopes Bhering, Leonardo Nunes Nesi, Adriano Oliveira Silva, Franklin Magnum de Rosado‐Souza, Laise Rossi, Magdalena Sulpice, Ronan Usadel, Björn de Setta, Nathalia |
| author_facet | Oliveira Silva, Franklin Magnum de Lichtenstein, Gabriel Alseekh, Saleh Rosado‐Souza, Laise Conte, Mariana Fuentes Suguiyama, Vanessa Lira, Bruno Silvestre Fanourakis, Dimitrios Usadel, Björn Lopes Bhering, Leonardo DaMatta, Fábio M. Sulpice, Ronan Araújo, Wagner L. Rossi, Magdalena de Setta, Nathalia Fernie, Alisdair R. Carrari, Fernando Nunes Nesi, Adriano |
| author_sort | Oliveira Silva, Franklin Magnum de |
| collection | INTA Digital |
| description | To identify genomic regions involved in the regulation of fundamental physiological processes such as photosynthesis and respiration, a population of Solanum pennellii introgression lines was analyzed. We determined phenotypes for physiological, metabolic, and growth related traits, including gas exchange and chlorophyll fluorescence parameters. Data analysis allowed the identification of 208 physiological and metabolic quantitative trait loci with 33 of these being associated to smaller intervals of the genomic regions, termed BINs. Eight BINs were identified that were associated with higher assimilation rates than the recurrent parent M82. Two and 10 genomic regions were related to shoot and root dry matter accumulation, respectively. Nine genomic regions were associated with starch levels, whereas 12 BINs were associated with the levels of other metabolites. Additionally, a comprehensive and detailed annotation of the genomic regions spanning these quantitative trait loci allowed us to identify 87 candidate genes that putatively control the investigated traits. We confirmed 8 of these at the level of variance in gene expression. Taken together, our results allowed the identification of candidate genes that most likely regulate photosynthesis, primary metabolism, and plant growth and as such provide new avenues for crop improvement. |
| format | Artículo |
| id | INTA12338 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | INTA123382022-07-18T10:45:02Z The genetic architecture of photosynthesis and plant growthrelated traits in tomato Oliveira Silva, Franklin Magnum de Lichtenstein, Gabriel Alseekh, Saleh Rosado‐Souza, Laise Conte, Mariana Fuentes Suguiyama, Vanessa Lira, Bruno Silvestre Fanourakis, Dimitrios Usadel, Björn Lopes Bhering, Leonardo DaMatta, Fábio M. Sulpice, Ronan Araújo, Wagner L. Rossi, Magdalena de Setta, Nathalia Fernie, Alisdair R. Carrari, Fernando Nunes Nesi, Adriano Introgression Lines Metabolism Quantitative Trait Loci Plant Biotechnology Photosynthesis Plant Growth Tomatoes Líneas de Introgresión Metabolismo Loci de Rasgos Cuantitativos Biotecnología Vegetal Fotosíntesis Crecimiento de Planta Tomate Solanum pennellii To identify genomic regions involved in the regulation of fundamental physiological processes such as photosynthesis and respiration, a population of Solanum pennellii introgression lines was analyzed. We determined phenotypes for physiological, metabolic, and growth related traits, including gas exchange and chlorophyll fluorescence parameters. Data analysis allowed the identification of 208 physiological and metabolic quantitative trait loci with 33 of these being associated to smaller intervals of the genomic regions, termed BINs. Eight BINs were identified that were associated with higher assimilation rates than the recurrent parent M82. Two and 10 genomic regions were related to shoot and root dry matter accumulation, respectively. Nine genomic regions were associated with starch levels, whereas 12 BINs were associated with the levels of other metabolites. Additionally, a comprehensive and detailed annotation of the genomic regions spanning these quantitative trait loci allowed us to identify 87 candidate genes that putatively control the investigated traits. We confirmed 8 of these at the level of variance in gene expression. Taken together, our results allowed the identification of candidate genes that most likely regulate photosynthesis, primary metabolism, and plant growth and as such provide new avenues for crop improvement. Instituto de Biotecnología Fil: Oliveira Silva, Franklin Magnum de. Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Max‐Planck Partner Group; Brasil Fil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Alseekh, Saleh. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Rosado‐Souza, Laise. Max Planck Institute of Molecular Plant Physiology; Alemania Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Conte, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Fuentes Suguiyama, Vanessa. Universidade Federal do ABC; Brasil Fil: Lira, Bruno Silvestre. Universidade de São Pablo. Instituto de Biociencias. Departamento de Botânica; Brasil Fil: Fanourakis, Dimitrios. Department of Viticulture, Floriculture, Vegetable Crops and Plant Protection; Grecia Fil: Usadel, Björn. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Usadel, Björn. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Lopes Bhering, Leonardo. Universidade Federal de Viçosa. Departamento de Biologia Geral; Brasil Fil: DaMatta, Fábio M. Universidade Federal de Viçosa. Departamento de Biologia Vegetal; Brasil Fil: Sulpice, Ronan. National University of Ireland Galway. Plant & Agribiosiences. Plant and AgriBiosciences Research Centre. Plant Systems Biology Lab; Irlanda Fil: Araújo, Wagner L. Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Max‐Planck Partner Group; Brasil Fil: Rossi, Magdalena. Universidade de São Pablo. Instituto de Biociencias. Departamento de Botânica; Brasil Fil: de Setta, Nathalia. Universidade Federal do ABC; Brasil Fil: Fernie, Alisdair R. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina Fil: Nunes Nesi, Adriano. Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Max‐Planck Partner Group; Brasil 2022-07-18T10:39:07Z 2022-07-18T10:39:07Z 2018-02 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/12338 https://onlinelibrary.wiley.com/doi/10.1111/pce.13084 1365-3040 https://doi.org/10.1111/pce.13084 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf Wiley Plant, Cell and Environment 41 (2) : 327-341 (Febrero 2018) |
| spellingShingle | Introgression Lines Metabolism Quantitative Trait Loci Plant Biotechnology Photosynthesis Plant Growth Tomatoes Líneas de Introgresión Metabolismo Loci de Rasgos Cuantitativos Biotecnología Vegetal Fotosíntesis Crecimiento de Planta Tomate Solanum pennellii Oliveira Silva, Franklin Magnum de Lichtenstein, Gabriel Alseekh, Saleh Rosado‐Souza, Laise Conte, Mariana Fuentes Suguiyama, Vanessa Lira, Bruno Silvestre Fanourakis, Dimitrios Usadel, Björn Lopes Bhering, Leonardo DaMatta, Fábio M. Sulpice, Ronan Araújo, Wagner L. Rossi, Magdalena de Setta, Nathalia Fernie, Alisdair R. Carrari, Fernando Nunes Nesi, Adriano The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title | The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title_full | The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title_fullStr | The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title_full_unstemmed | The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title_short | The genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| title_sort | genetic architecture of photosynthesis and plant growthrelated traits in tomato |
| topic | Introgression Lines Metabolism Quantitative Trait Loci Plant Biotechnology Photosynthesis Plant Growth Tomatoes Líneas de Introgresión Metabolismo Loci de Rasgos Cuantitativos Biotecnología Vegetal Fotosíntesis Crecimiento de Planta Tomate Solanum pennellii |
| url | http://hdl.handle.net/20.500.12123/12338 https://onlinelibrary.wiley.com/doi/10.1111/pce.13084 https://doi.org/10.1111/pce.13084 |
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