The genome of the stress-tolerant wild tomato species Solanum pennellii
Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | info:ar-repo/semantics/artículo |
| Lenguaje: | Inglés |
| Publicado: |
Nature Publishing Group
2022
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.12123/12311 https://www.nature.com/articles/ng.3046 https://doi.org/10.1038/ng.3046 |
| _version_ | 1855036733277601792 |
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| author | Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. |
| author_browse | Aflitos, Saulo Alves Alseekh, Saleh Arsova, Borjana Bolger, Anthony Bolger, Marie E. Carrari, Fernando Conte, Mariana Fei, Zhangjun Fernie, Alisdair R. Fich, Eric A. Giovannoni, James J. Headland, Lauren R. Jiménez-Goméz, José M. Keller, Heike Kimura, Seisuke Koenig, Daniel Kumar, Ravi Lankhorst, René Klein Lanz, Christa Lichtenstein, Gabriel Maloof, Julin N. Mao, Linyong Maumus, Florian Ofner, Itai Osorio, Sonia Panstruga, Ralph Quesneville, Hadi Rose, Jocelyn K. C. Ryngajllo, Malgorzata Schijlen, Elio Schneeberger, Korbinian Schwacke, Rainer Scossa, Federico Sinha, Neelima Sørensen, Iben Tohge, Takayuki Usadel, Björn Vogel, Alexander Vrebalov, Julia Weigel, Detlef Xu, Yimin Zamir, Dani van Ham, Roeland C. H. J. |
| author_facet | Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. |
| author_sort | Bolger, Anthony |
| collection | INTA Digital |
| description | Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm. |
| format | info:ar-repo/semantics/artículo |
| id | INTA12311 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Nature Publishing Group |
| publisherStr | Nature Publishing Group |
| record_format | dspace |
| spelling | INTA123112022-07-12T17:34:59Z The genome of the stress-tolerant wild tomato species Solanum pennellii Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum1. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance2. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm. Instituto de Biotecnología Fil: Bolger, Anthony. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Bolger, Anthony. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Scossa, Federico. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Scossa, Federico. Centro di Ricerca per l’Orticoltura. Consiglio per la Ricerca e la Sperimentazione in Agricoltura; Italia Fil: Bolger, Marie E. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Bolger, Marie E. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Lanz, Christa. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Maumus, Florian. Institut National de la Recherche Agronomique (INRA); Francia Fil: Tohge, Takayuki. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Quesneville, Hadi. Institut National de la Recherche Agronomique (INRA); Francia Fil: Alseekh, Saleh. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Sørensen, Iben. Cornell University. Department of Plant Biology; Estados Unidos Fil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Lichtenstein, Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Fich, Eric A. Cornell University. Department of Plant Biology; Estados Unidos Fil: Conte, Mariana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Conte, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Keller, Heike. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Schneeberger, Korbinian. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Schneeberger, Korbinian. Max Planck Institute for Plant Breeding Research. Department of Plant Developmental Biology; Alemania Fil: Schwacke, Rainer. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Schwacke, Rainer. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Ofner, Itai. Hebrew University of Jerusalem. Faculty of Agriculture; Israel Fil: Vrebalov, Julia. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Xu, Yimin. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Osorio, Sonia. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania Fil: Osorio, Sonia. University of Málaga. Department of Molecular Biology and Biochemistry. Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora"; España Fil: Aflitos, Saulo Alves. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Schijlen, Elio. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Jiménez-Goméz, José M. Max Planck Institute for Plant Breeding Research. Department of Plant Breeding and Genetics; Alemania Fil: Jiménez-Goméz, José M. Institut National de la Recherche Agronomique (INRA). Institut Jean-Pierre Bourgin; Francia Fil: Ryngajllo, Malgorzata. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Kimura, Seisuke. University of California. Department of Plant Biology; Estados Unidos Fil: Kumar, Ravi. University of California. Department of Plant Biology; Estados Unidos Fil: Koenig, Daniel. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Koenig, Daniel. University of California. Department of Plant Biology; Estados Unidos Fil: Headland, Lauren R. University of California. Department of Plant Biology; Estados Unidos Fil: Maloof, Julin N. University of California. Department of Plant Biology; Estados Unidos Fil: Sinha, Neelima. University of California. Department of Plant Biology; Estados Unidos Fil: van Ham, Roeland C. H. J. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Lankhorst, René Klein. Wageningen University and Research Centre. Plant Research International; Países Bajos Fil: Mao, Linyong. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Vogel, Alexander. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Arsova, Borjana. Heinrich Heine Universität. Entwicklungs und Molekularbiologie der Pflanzen; Alemania Fil: Panstruga, Ralph. Rheinisch-Westfälische Technische Hochschule Aachen University. Unit of Plant Molecular Cell Biology. Institute for Biology I; Alemania Fil: Fei, Zhangjun. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Fei, Zhangjun. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos Fil: Rose, Jocelyn K. C. Cornell University. Department of Plant Biology; Estados Unidos Fil: Zamir, Dani. Hebrew University of Jerusalem. Faculty of Agriculture; Israel Fil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Carrari, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina Fil: Giovannoni, James J. Cornell University. Boyce Thompson Institute for Plant Research; Estados Unidos Fil: Giovannoni, James J. United States Department of Agriculture (USDA). Robert W. Holley Center for Agriculture and Health; Estados Unidos Fil: Weigel, Detlef. Max Planck Institute for Developmental Biology. Department of Molecular Biology; Alemania Fil: Usadel, Björn. Max Planck Institute of Molecular Plant Physiology. Department of Metabolic Networks; Alemania Fil: Usadel, Björn. Rheinisch-Westfälische Technische Hochschule Aachen University. Institute for Botany and Molecular Genetics (IBMG). Institute for Biology I; Alemania Fil: Usadel, Björn. Forschungszentrum Jülich. Institut für Bio- und Geowissenschaften 2 (IBG-2); Alemania Fil: Fernie, Alisdair R. Max Planck Institute of Molecular Plant Physiology. Department of Molecular Physiology; Alemania 2022-07-12T17:26:07Z 2022-07-12T17:26:07Z 2014-09 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/12311 https://www.nature.com/articles/ng.3046 1546-1718 https://doi.org/10.1038/ng.3046 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf Nature Publishing Group Nature Genetics 46 (9) : 1034-1039 (Septiembre 2014) |
| spellingShingle | Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos Bolger, Anthony Scossa, Federico Bolger, Marie E. Lanz, Christa Maumus, Florian Tohge, Takayuki Quesneville, Hadi Alseekh, Saleh Sørensen, Iben Lichtenstein, Gabriel Fich, Eric A. Conte, Mariana Keller, Heike Schneeberger, Korbinian Schwacke, Rainer Ofner, Itai Vrebalov, Julia Xu, Yimin Osorio, Sonia Aflitos, Saulo Alves Schijlen, Elio Jiménez-Goméz, José M. Ryngajllo, Malgorzata Kimura, Seisuke Kumar, Ravi Koenig, Daniel Headland, Lauren R. Maloof, Julin N. Sinha, Neelima van Ham, Roeland C. H. J. Lankhorst, René Klein Mao, Linyong Vogel, Alexander Arsova, Borjana Panstruga, Ralph Fei, Zhangjun Rose, Jocelyn K. C. Zamir, Dani Carrari, Fernando Giovannoni, James J. Weigel, Detlef Usadel, Björn Fernie, Alisdair R. The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title | The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_full | The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_fullStr | The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_full_unstemmed | The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_short | The genome of the stress-tolerant wild tomato species Solanum pennellii |
| title_sort | genome of the stress tolerant wild tomato species solanum pennellii |
| topic | Genomes Stress Tolerance Tomatoes Genetic Maps Germplasm Genomas Estres Tolerancia Solanum pennellii Tomate Mapas Genéticos Germoplasma Candidate Genes Genes Candidatos |
| url | http://hdl.handle.net/20.500.12123/12311 https://www.nature.com/articles/ng.3046 https://doi.org/10.1038/ng.3046 |
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