Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba
Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient ma...
| Main Authors: | , , , , , , , , , , , , , |
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| Format: | Artículo |
| Language: | Inglés |
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MDPI
2022
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| Subjects: | |
| Online Access: | http://hdl.handle.net/20.500.12123/11544 https://www.mdpi.com/2223-7747/11/7/921 https://doi.org/10.3390/plants11070921 |
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| author | Belaj, Angjelina Ninot, Antònia Gómez-Gálvez, Francisco J. El Riachy, Milad Gurbuz-Veral, Melek Torres, Myriam Mariela Lazaj, Adhurim Klepo, Tatjana Paz, Sergio Ugarte, Javier Baldoni, Luciana Lorite, Ignacio J. Šatović, Zlatko de la Rosa, Raúl |
| author_browse | Baldoni, Luciana Belaj, Angjelina El Riachy, Milad Gurbuz-Veral, Melek Gómez-Gálvez, Francisco J. Klepo, Tatjana Lazaj, Adhurim Lorite, Ignacio J. Ninot, Antònia Paz, Sergio Torres, Myriam Mariela Ugarte, Javier de la Rosa, Raúl Šatović, Zlatko |
| author_facet | Belaj, Angjelina Ninot, Antònia Gómez-Gálvez, Francisco J. El Riachy, Milad Gurbuz-Veral, Melek Torres, Myriam Mariela Lazaj, Adhurim Klepo, Tatjana Paz, Sergio Ugarte, Javier Baldoni, Luciana Lorite, Ignacio J. Šatović, Zlatko de la Rosa, Raúl |
| author_sort | Belaj, Angjelina |
| collection | INTA Digital |
| description | Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new
acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for
their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources. |
| format | Artículo |
| id | INTA11544 |
| institution | Instituto Nacional de Tecnología Agropecuaria (INTA -Argentina) |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | INTA115442022-04-04T16:19:05Z Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba Belaj, Angjelina Ninot, Antònia Gómez-Gálvez, Francisco J. El Riachy, Milad Gurbuz-Veral, Melek Torres, Myriam Mariela Lazaj, Adhurim Klepo, Tatjana Paz, Sergio Ugarte, Javier Baldoni, Luciana Lorite, Ignacio J. Šatović, Zlatko de la Rosa, Raúl Olea europaea Germoplasma Diversidad Genética (como Recurso) Germplasm Genetic Diversity (as Resource) Olivo Olive, the emblematic Mediterranean fruit crop, owns a great varietal diversity, which is maintained in ex situ field collections, such as the World Olive Germplasm Bank of Córdoba (WOGBC), Spain. Accurate identification of WOGBC, one of the world’s largest collections, is essential for efficient management and use of olive germplasm. The present study is the first report of the use of a core set of 96 EST-SNP markers for the fingerprinting of 1273 accessions from 29 countries, including both field and new acquired accessions. The EST-SNP fingerprinting made possible the accurate identification of 668 different genotypes, including 148 detected among the new acquired accessions. Despite the overall high genetic diversity found at WOGBC, the EST-SNPs also revealed the presence of remarkable redundant germplasm mostly represented by synonymy cases within and between countries. This finding, together with the presence of homonymy cases, may reflect a continuous interchange of olive cultivars, as well as a common and general approach for their naming. The structure analysis revealed a certain geographic clustering of the analysed germplasm. The EST-SNP panel under study provides a powerful and accurate genotyping tool, allowing for the foundation of a common strategy for efficient safeguarding and management of olive genetic resources. EEA San Juan Fil: Belaj, Angjelina. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España Fil: Ninot, Antònia . IRTA; España Fil: Gómez-Gálvez, Francisco J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España Fil: El Riachy, Milad. LARI. Department of Olive and Olive Oil; Líbano Fil: Gurbuz-Veral, Melek. Olive Research Institute. Department of Breeding and Genetics; Turquía Fil: Torres, Myriam Mariela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria San Juan; Argentina. Fil: Torres, Myriam Mariela. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Lazaj, Adhurim. Qendra e Transferimit te Teknologjise Bujqesore; Albania Fil: Klepo, Tatjana.Croatian Agency for Agriculture and Food. Center of Pomology; Croacia Fil: Paz, Sergio. Servicio de Transferencia de Tecnología Conselleria de Agricultura, Desarrollo Rural, Emergencia Climática y Transición Ecológica; España Fil: Ugarte, Javier. Gobierno de La Rioja. Servicio de Investigación Agraria y Sanidad Vegetal; España Fil: Baldoni, Luciana. National Research Council. Institute of Biosciences and Bioresources; Italia Fil: Lorite, Ignacio J. Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España Fil: Šatović, Zlatko .University of Zagreb. Department of Seed Science and Technology, Faculty of Agriculture; Croacia Fil: Šatović, Zlatko. Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroP-BioDiv); Croacia Fil: de la Rosa, Raúl . Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica (IFAPA) . Centro “Alameda del Obispo”; España 2022-04-04T16:09:42Z 2022-04-04T16:09:42Z 2022-03-29 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://hdl.handle.net/20.500.12123/11544 https://www.mdpi.com/2223-7747/11/7/921 2223-7747 https://doi.org/10.3390/plants11070921 eng info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) application/pdf MDPI Plants 11 (921) : 1-24 (marzo 2022) |
| spellingShingle | Olea europaea Germoplasma Diversidad Genética (como Recurso) Germplasm Genetic Diversity (as Resource) Olivo Belaj, Angjelina Ninot, Antònia Gómez-Gálvez, Francisco J. El Riachy, Milad Gurbuz-Veral, Melek Torres, Myriam Mariela Lazaj, Adhurim Klepo, Tatjana Paz, Sergio Ugarte, Javier Baldoni, Luciana Lorite, Ignacio J. Šatović, Zlatko de la Rosa, Raúl Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title | Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title_full | Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title_fullStr | Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title_full_unstemmed | Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title_short | Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba |
| title_sort | utility of est snp markers for improving management and use of olive genetic resources a case study at the worldwide olive germplasm bank of cordoba |
| topic | Olea europaea Germoplasma Diversidad Genética (como Recurso) Germplasm Genetic Diversity (as Resource) Olivo |
| url | http://hdl.handle.net/20.500.12123/11544 https://www.mdpi.com/2223-7747/11/7/921 https://doi.org/10.3390/plants11070921 |
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