The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
The article is a preprint, it is important to consider that it is not peer-reviewed
| Autores principales: | , , , , , , , , , |
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| Formato: | info:eu-repo/semantics/preprint |
| Lenguaje: | Inglés |
| Publicado: |
F1000Research
2025
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| Materias: | |
| Acceso en línea: | http://hdl.handle.net/20.500.12955/2693 https://doi.org/10.12688/f1000research.155147.1 |
| _version_ | 1855028442772275200 |
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| author | Saldaña, Carla L. Chura Llanos, Luz S. Estrada Cañari, Richard Fernandez Huaytalla, Elizabeth Zirena Vilca, Franz Guerrero Abad, Juan Carlos Amasifuen Guerra, Carlos Alberto Gutierrez Reynoso, Dina Lida Injante Silva, Pedro Hugo Arbizu, Carlos I |
| author_browse | Amasifuen Guerra, Carlos Alberto Arbizu, Carlos I Chura Llanos, Luz S. Estrada Cañari, Richard Fernandez Huaytalla, Elizabeth Guerrero Abad, Juan Carlos Gutierrez Reynoso, Dina Lida Injante Silva, Pedro Hugo Saldaña, Carla L. Zirena Vilca, Franz |
| author_facet | Saldaña, Carla L. Chura Llanos, Luz S. Estrada Cañari, Richard Fernandez Huaytalla, Elizabeth Zirena Vilca, Franz Guerrero Abad, Juan Carlos Amasifuen Guerra, Carlos Alberto Gutierrez Reynoso, Dina Lida Injante Silva, Pedro Hugo Arbizu, Carlos I |
| author_sort | Saldaña, Carla L. |
| collection | Repositorio INIA |
| description | The article is a preprint, it is important to consider that it is not peer-reviewed |
| format | info:eu-repo/semantics/preprint |
| id | INIA2693 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| publisher | F1000Research |
| publisherStr | F1000Research |
| record_format | dspace |
| spelling | INIA26932025-03-31T05:21:38Z The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast Saldaña, Carla L. Chura Llanos, Luz S. Estrada Cañari, Richard Fernandez Huaytalla, Elizabeth Zirena Vilca, Franz Guerrero Abad, Juan Carlos Amasifuen Guerra, Carlos Alberto Gutierrez Reynoso, Dina Lida Injante Silva, Pedro Hugo Arbizu, Carlos I plastome NGS coastal zone phylogenomics https://purl.org/pe-repo/ocde/ford#4.01.01 https://purl.org/pe-repo/ocde/ford#4.01.04 Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics The article is a preprint, it is important to consider that it is not peer-reviewed Olive (Olea europaea Linaeus 1753) is one of the valuable fruit trees and very important edible oil plant in the world. The chloroplast (cp) genome of an olive tree (Olea europaea) from the southern Peruvian arid coast was obtained for the first time. Genomic DNA of high quality was used to generate librarieswith Illumina Hiseq paired-end methods. The cp genome is 155,886 pb in length and contains a large single-copy region (LSC) of 86,610 pb and a small single copy region (SSC) of 17,790 pb separated by two inverted repeat (IR) regions (25,741bp). The cp genome of olive contains 124 genes that consists of 80 protein-coding genes, 36 tRNA, eight rRNA. Phylogenetic analysis showed this olive tree is sister to O. europaea subsp. maroccana ( Oleeae tribe). This study presents the first overview of the chloroplast genome organization and phylogenetics of O. europaea, offering valuable insights for genetic and evolutionary research in the genus Olea. This research was funded by "Universidad Nacional de Moquegua". C.L.S. and C.I.A. were funded by "Programa Presupuestal No. 068" of the Peruvian Government. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. 2025-03-31T05:21:38Z 2025-03-31T05:21:38Z 2024-12-04 info:eu-repo/semantics/preprint Saldaña CL, Chura-Llanos LS, Estrada R et al. The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast [version 1; peer review: awaiting peer review] F1000Research 2024, 13:1478 http://hdl.handle.net/20.500.12955/2693 https://doi.org/10.12688/f1000research.155147.1 eng F1000Research info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ application/pdf application/pdf F1000Research GB Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | plastome NGS coastal zone phylogenomics https://purl.org/pe-repo/ocde/ford#4.01.01 https://purl.org/pe-repo/ocde/ford#4.01.04 Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics Saldaña, Carla L. Chura Llanos, Luz S. Estrada Cañari, Richard Fernandez Huaytalla, Elizabeth Zirena Vilca, Franz Guerrero Abad, Juan Carlos Amasifuen Guerra, Carlos Alberto Gutierrez Reynoso, Dina Lida Injante Silva, Pedro Hugo Arbizu, Carlos I The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title | The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title_full | The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title_fullStr | The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title_full_unstemmed | The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title_short | The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast |
| title_sort | complete chloroplast genome of a centennial olive tree olea europaea oleaceae from the southern peruvian coast |
| topic | plastome NGS coastal zone phylogenomics https://purl.org/pe-repo/ocde/ford#4.01.01 https://purl.org/pe-repo/ocde/ford#4.01.04 Olea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics |
| url | http://hdl.handle.net/20.500.12955/2693 https://doi.org/10.12688/f1000research.155147.1 |
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