The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis
The population of Peruvian creole cattle (PCC) is decreasing mainly due to the introduction of more productive breeds in recent years. We report the complete mitochondrial genome sequence of a PCC bull for the first time. This genome was 16,339 bp in length with the base composition 31.43% A, 28.64%...
| Autores principales: | , , , , , , , , |
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| Formato: | Objeto de conferencia |
| Lenguaje: | Inglés |
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Wageningen Academic Publishers
2023
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/20.500.12955/2255 https://doi.org/10.3920/978-90-8686-940-4_264 |
| _version_ | 1855490332255322112 |
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| author | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzáles, J. Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita |
| author_browse | Arbizu Berrocal, Carlos Irvin Chávez Galarza, Julio César Corredor Arizapana, Flor Anita Ferro Mauricio, Rubén Darío Gonzáles, J. Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Quilcate Pairazamán, Carlos Enrique Vásquez Pérez, Héctor Vladimir |
| author_facet | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzáles, J. Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita |
| author_sort | Arbizu Berrocal, Carlos Irvin |
| collection | Repositorio INIA |
| description | The population of Peruvian creole cattle (PCC) is decreasing mainly due to the introduction of more productive breeds in recent years. We report the complete mitochondrial genome sequence of a PCC bull for the first time. This genome was 16,339 bp in length with the base composition 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (Leucine), AUA (Isoleucine), AUU (Isoleucine), AUC (Isoleucine) and ACA (Threonine). Maximum likelihood analysis clearly demonstrated that PCC are strongly related to a native African breed, giving insights into the maternal ancestry of PCC. The annotated mitochondrial genome of PCC would serve as an important genetic data set for further breeding work and conservation strategies. |
| format | Objeto de conferencia |
| id | INIA2255 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | Wageningen Academic Publishers |
| publisherStr | Wageningen Academic Publishers |
| record_format | dspace |
| spelling | INIA22552024-02-28T20:38:34Z The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzáles, J. Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita Mitocondrial Genome Cattle Bos Taurus Phylogenetic analysis https://purl.org/pe-repo/ocde/ford#4.02.01 Phylogenetic analysis Genomes Bos taurus Análisis filogenético Genomas The population of Peruvian creole cattle (PCC) is decreasing mainly due to the introduction of more productive breeds in recent years. We report the complete mitochondrial genome sequence of a PCC bull for the first time. This genome was 16,339 bp in length with the base composition 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (Leucine), AUA (Isoleucine), AUU (Isoleucine), AUC (Isoleucine) and ACA (Threonine). Maximum likelihood analysis clearly demonstrated that PCC are strongly related to a native African breed, giving insights into the maternal ancestry of PCC. The annotated mitochondrial genome of PCC would serve as an important genetic data set for further breeding work and conservation strategies. 2023-08-29T14:28:37Z 2023-08-29T14:28:37Z 2023-02-09 info:eu-repo/semantics/conferenceObject Arbizu, C. I.; Ferro-Mauricio, R. D.; Chávez-Galarza, J. C.; Vásquez, H. V.; Maicelo, J. L.; Poemape, C.; ... & Corredor, F. A. (2022). The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis. In Veerkamp, R.F.; & De Haas Y. (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP) Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen Academic Publishers, 1114-1117. doi: 10.3920/978-90-8686-940-4_264 978-90-8686-940-4 https://hdl.handle.net/20.500.12955/2255 https://doi.org/10.3920/978-90-8686-940-4_264 eng info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ application/pdf application/pdf Wageningen Academic Publishers NL Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | Mitocondrial Genome Cattle Bos Taurus Phylogenetic analysis https://purl.org/pe-repo/ocde/ford#4.02.01 Phylogenetic analysis Genomes Bos taurus Análisis filogenético Genomas Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzáles, J. Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title | The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title_full | The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title_fullStr | The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title_full_unstemmed | The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title_short | The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis |
| title_sort | complete mitochondrial genome of a peruvian creole cattle bos taurus and its phylogenetic analysis |
| topic | Mitocondrial Genome Cattle Bos Taurus Phylogenetic analysis https://purl.org/pe-repo/ocde/ford#4.02.01 Phylogenetic analysis Genomes Bos taurus Análisis filogenético Genomas |
| url | https://hdl.handle.net/20.500.12955/2255 https://doi.org/10.3920/978-90-8686-940-4_264 |
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