The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis
Cattle spread throughout the American continent during the colonization years, originating creole breeds that adapted to a wide range of climate conditions. The population of creole cattle in Peru is decreasing mainly due to the introduction of more productive breeds in recent years. During the last...
| Autores principales: | , , , , , , , , |
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| Formato: | info:eu-repo/semantics/article |
| Lenguaje: | Inglés |
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MDPI
2022
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/20.500.12955/1732 https://doi.org/10.3390/data7060076 |
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| author | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzales, Jhony Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita |
| author_browse | Arbizu Berrocal, Carlos Irvin Chávez Galarza, Julio César Corredor Arizapana, Flor Anita Ferro Mauricio, Rubén Darío Gonzales, Jhony Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Quilcate Pairazamán, Carlos Enrique Vásquez Pérez, Héctor Vladimir |
| author_facet | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzales, Jhony Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita |
| author_sort | Arbizu Berrocal, Carlos Irvin |
| collection | Repositorio INIA |
| description | Cattle spread throughout the American continent during the colonization years, originating creole breeds that adapted to a wide range of climate conditions. The population of creole cattle in Peru is decreasing mainly due to the introduction of more productive breeds in recent years. During the last 15 years, there has been significant progress in cattle genomics. However, little is known about the genetics of the Peruvian creole cattle (PCC) despite its importance to (i) improving productivity in the Andean region, (ii) agricultural labor, and (iii) cultural traditions. In addition, the origin and phylogenetic relationship of the PCC are still unclear. In order to promote the conservation of the PCC, we sequenced the mitochondrial genome of a creole bull, which also possessed exceptional fighting skills and was employed for agricultural tasks, from the highlands of Arequipa for the first time. The total mitochondrial genome sequence is 16,339 bp in length with the base composition of 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contains 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (leucine), AUA (isoleucine), AUU (isoleucine), AUC (isoleucine), and ACA (threonine). Maximum likelihood reconstruction using complete mitochondrial genome sequences showed that the PCC is related to native African breeds. The annotated mitochondrial genome of PCC will serve as an important genetic data set for further breeding work and conservation strategies. |
| format | info:eu-repo/semantics/article |
| id | INIA1732 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | INIA17322023-06-26T20:01:19Z The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzales, Jhony Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita Zoogenetic resources Organelle Genomics NGS Cattle Bos Taurus https://purl.org/pe-repo/ocde/ford#4.02.00 Cattle spread throughout the American continent during the colonization years, originating creole breeds that adapted to a wide range of climate conditions. The population of creole cattle in Peru is decreasing mainly due to the introduction of more productive breeds in recent years. During the last 15 years, there has been significant progress in cattle genomics. However, little is known about the genetics of the Peruvian creole cattle (PCC) despite its importance to (i) improving productivity in the Andean region, (ii) agricultural labor, and (iii) cultural traditions. In addition, the origin and phylogenetic relationship of the PCC are still unclear. In order to promote the conservation of the PCC, we sequenced the mitochondrial genome of a creole bull, which also possessed exceptional fighting skills and was employed for agricultural tasks, from the highlands of Arequipa for the first time. The total mitochondrial genome sequence is 16,339 bp in length with the base composition of 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contains 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (leucine), AUA (isoleucine), AUU (isoleucine), AUC (isoleucine), and ACA (threonine). Maximum likelihood reconstruction using complete mitochondrial genome sequences showed that the PCC is related to native African breeds. The annotated mitochondrial genome of PCC will serve as an important genetic data set for further breeding work and conservation strategies. 1. Introduction_2. Results_3. Discussion_4. Materials and methods_5. Conclusions_References 2022-06-16T16:32:50Z 2022-06-16T16:32:50Z 2022-06-06 info:eu-repo/semantics/article Arbizu, C.I.; Ferro-Mauricio, R.D.; Chávez-Galarza, J.C.; Vásquez, H.V.; Maicelo, J.L.; Poemape, C.; Gonzales, J.; Quilcate, C.; Corredor, F.-A. The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis. Data 2022, 7, 76. doi: 10.3390/data7060076 https://hdl.handle.net/20.500.12955/1732 Data https://doi.org/10.3390/data7060076 eng Data 2022, 7 (6), 76 https://doi.org/10.3390/data7060076 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ application/pdf application/pdf Perú MDPI Suiza Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | Zoogenetic resources Organelle Genomics NGS Cattle Bos Taurus https://purl.org/pe-repo/ocde/ford#4.02.00 Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Poemape Tuesta, Carlos Augusto Gonzales, Jhony Quilcate Pairazamán, Carlos Enrique Corredor Arizapana, Flor Anita The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title | The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title_full | The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title_fullStr | The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title_full_unstemmed | The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title_short | The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis |
| title_sort | complete mitochondrial genome of a neglected breed the peruvian creole cattle bos taurus and its phylogenetic analysis |
| topic | Zoogenetic resources Organelle Genomics NGS Cattle Bos Taurus https://purl.org/pe-repo/ocde/ford#4.02.00 |
| url | https://hdl.handle.net/20.500.12955/1732 https://doi.org/10.3390/data7060076 |
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