Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small s...
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| Format: | info:eu-repo/semantics/article |
| Language: | Inglés |
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Taylor & Francis Group
2022
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| Online Access: | https://hdl.handle.net/20.500.12955/1631 https://doi.org/10.1080/23802359.2021.2014366 |
| _version_ | 1855028637144711168 |
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| author | Arbizu Berrocal, Carlos Irvin Saldaña Serrano, Carla Lizet Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Herrera Flores, Jordán Valentín Contreras Liza, Sergio Guerrero Abad, Juan Carlos Maicelo Quintana, Jorge Luis |
| author_browse | Arbizu Berrocal, Carlos Irvin Chávez Galarza, Julio César Contreras Liza, Sergio Ferro Mauricio, Rubén Darío Guerrero Abad, Juan Carlos Herrera Flores, Jordán Valentín Maicelo Quintana, Jorge Luis Saldaña Serrano, Carla Lizet |
| author_facet | Arbizu Berrocal, Carlos Irvin Saldaña Serrano, Carla Lizet Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Herrera Flores, Jordán Valentín Contreras Liza, Sergio Guerrero Abad, Juan Carlos Maicelo Quintana, Jorge Luis |
| author_sort | Arbizu Berrocal, Carlos Irvin |
| collection | Repositorio INIA |
| description | In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe. |
| format | info:eu-repo/semantics/article |
| id | INIA1631 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Taylor & Francis Group |
| publisherStr | Taylor & Francis Group |
| record_format | dspace |
| spelling | INIA16312023-06-26T16:55:31Z Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper Arbizu Berrocal, Carlos Irvin Saldaña Serrano, Carla Lizet Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Herrera Flores, Jordán Valentín Contreras Liza, Sergio Guerrero Abad, Juan Carlos Maicelo Quintana, Jorge Luis NGS Chloroplast Genetic resources Arnaucho Phylogenomics https://purl.org/pe-repo/ocde/ford#4.04.00 In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe. 2022-03-02T23:27:42Z 2022-03-02T23:27:42Z 2022-01-05 info:eu-repo/semantics/article Carlos I. Arbizu, Carla L. Saldaña, Rubén D. Ferro-Mauricio, Julio C. Chávez- Galarza, Jordan Herrera, Sergio Contreras-Liza, Juan C. Guerrero-Abad & Jorge L. Maicelo (2022) Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper, Mitochondrial DNA Part B, 7:1, 156-158, doi: 10.1080/23802359.2021.2014366 https://hdl.handle.net/20.500.12955/1631 Mitochondrial DNA Part B https://doi.org/10.1080/23802359.2021.2014366 eng Mitochondrial DNA Part B, 7:1, 156-158 https://doi.org/10.1080/23802359.2021.2014366 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/4.0/ application/pdf application/pdf Perú Taylor & Francis Group Reino Unido Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | NGS Chloroplast Genetic resources Arnaucho Phylogenomics https://purl.org/pe-repo/ocde/ford#4.04.00 Arbizu Berrocal, Carlos Irvin Saldaña Serrano, Carla Lizet Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Herrera Flores, Jordán Valentín Contreras Liza, Sergio Guerrero Abad, Juan Carlos Maicelo Quintana, Jorge Luis Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_full | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_fullStr | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_full_unstemmed | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_short | Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper |
| title_sort | characterization of the complete chloroplast genome of a peruvian landrace of capsicum chinense jacq solanaceae arnaucho chili pepper |
| topic | NGS Chloroplast Genetic resources Arnaucho Phylogenomics https://purl.org/pe-repo/ocde/ford#4.04.00 |
| url | https://hdl.handle.net/20.500.12955/1631 https://doi.org/10.1080/23802359.2021.2014366 |
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