The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)
Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repea...
| Autores principales: | , , , , , |
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| Formato: | info:eu-repo/semantics/article |
| Lenguaje: | Inglés |
| Publicado: |
Taylor & Francis
2021
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/20.500.12955/1470 https://doi.org/10.1080/23802359.2021.1969697 |
| _version_ | 1855028708718411776 |
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| author | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Guerrero Abad, Juan Carlos Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis |
| author_browse | Arbizu Berrocal, Carlos Irvin Chávez Galarza, Julio César Ferro Mauricio, Rubén Darío Guerrero Abad, Juan Carlos Maicelo Quintana, Jorge Luis Vásquez Pérez, Héctor Vladimir |
| author_facet | Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Guerrero Abad, Juan Carlos Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis |
| author_sort | Arbizu Berrocal, Carlos Irvin |
| collection | Repositorio INIA |
| description | Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family. |
| format | info:eu-repo/semantics/article |
| id | INIA1470 |
| institution | Institucional Nacional de Innovación Agraria |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Taylor & Francis |
| publisherStr | Taylor & Francis |
| record_format | dspace |
| spelling | INIA14702022-11-21T20:15:23Z The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Guerrero Abad, Juan Carlos Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Phylogenomics Rubiaceae Chloroplast genoma Quina tree https://purl.org/pe-repo/ocde/ford#4.04.02 Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family. 2021-09-10T14:06:26Z 2021-09-10T14:06:26Z 2021-09-06 info:eu-repo/semantics/article Arbizu, C.; Ferro, R.; Chávez, J.; Guerrero, J.; Vásquez, H. & Maicelo, J. (2021). The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae). Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783. doi: 10.1080/23802359.2021.1969697 https://hdl.handle.net/20.500.12955/1470 Mitochondrial DNA Part B https://doi.org/10.1080/23802359.2021.1969697 eng Mitochondrial DNA Part B 2021, Vol. 6., No 9, 2781-2783 https://doi.org/10.1080/23802359.2021.1969697 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/4.0/ application/pdf application/pdf Perú Taylor & Francis Inglaterra Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA |
| spellingShingle | Phylogenomics Rubiaceae Chloroplast genoma Quina tree https://purl.org/pe-repo/ocde/ford#4.04.02 Arbizu Berrocal, Carlos Irvin Ferro Mauricio, Rubén Darío Chávez Galarza, Julio César Guerrero Abad, Juan Carlos Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title | The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title_full | The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title_fullStr | The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title_full_unstemmed | The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title_short | The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) |
| title_sort | complete chloroplast genome of the national tree of peru quina cinchona officinalis l rubiaceae |
| topic | Phylogenomics Rubiaceae Chloroplast genoma Quina tree https://purl.org/pe-repo/ocde/ford#4.04.02 |
| url | https://hdl.handle.net/20.500.12955/1470 https://doi.org/10.1080/23802359.2021.1969697 |
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