iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize
Motivation: Because of the unique biological features, a bioinformatic platform for the integrated genetic and physical map of maize is required for storing, integrating, accessing and visualizing the underlying data. Results: The goal of the Maize Mapping Project is to develop a fully integrated ge...
| Autores principales: | , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2003
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/97993 |
| _version_ | 1855540883179438080 |
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| author | Fang, Z. Cone, K. Sánchez Villeda, H. Polacco, M. McMullen, M. Schroeder, S. Gardiner, J. Davis, G. Havermann, S. Yim, Y. Vroh Bi, Irie Coe, E. Bi, I.V. |
| author_browse | Bi, I.V. Coe, E. Cone, K. Davis, G. Fang, Z. Gardiner, J. Havermann, S. McMullen, M. Polacco, M. Schroeder, S. Sánchez Villeda, H. Vroh Bi, Irie Yim, Y. |
| author_facet | Fang, Z. Cone, K. Sánchez Villeda, H. Polacco, M. McMullen, M. Schroeder, S. Gardiner, J. Davis, G. Havermann, S. Yim, Y. Vroh Bi, Irie Coe, E. Bi, I.V. |
| author_sort | Fang, Z. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Motivation: Because of the unique biological features, a bioinformatic platform for the integrated genetic and physical map of maize is required for storing, integrating, accessing and visualizing the underlying data. Results: The goal of the Maize Mapping Project is to develop a fully integrated genetic and physical map for maize. To display this integrated map, we have developed iMap. iMap has three main components: a relational database (iMapDB), a map graphic browser (iMap Viewer) and a search utility (iMap Search). iMapDB is populated with current genetic and physical map data, describing relationships among genetic loci, molecular markers and bacterial artificial chromosome (BAC) contigs. The database also contains integrated information produced by applying a set of anchoring rules to assign BAC contigs to specific locations on the genetic map. The iMap Viewer and iMap Search functions are combined in the user interface to allow viewing and retrieving many types of genetic and physical map data. The iMap Viewer features side-by-side chromosome-based displays of the genetic map and associated BAC contigs. For each genetic locus, information about marker type or contig can be viewed via pop-up windows that feature links to external data resources. Searches can be conducted for genetic locus, probe or sequence accession number; search results include relevant map positions, anchored BAC contigs and links to the graphical display of relevant chromosomes. |
| format | Journal Article |
| id | CGSpace97993 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2003 |
| publishDateRange | 2003 |
| publishDateSort | 2003 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace979932024-05-15T05:12:14Z iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize Fang, Z. Cone, K. Sánchez Villeda, H. Polacco, M. McMullen, M. Schroeder, S. Gardiner, J. Davis, G. Havermann, S. Yim, Y. Vroh Bi, Irie Coe, E. Bi, I.V. maize genetic maps Motivation: Because of the unique biological features, a bioinformatic platform for the integrated genetic and physical map of maize is required for storing, integrating, accessing and visualizing the underlying data. Results: The goal of the Maize Mapping Project is to develop a fully integrated genetic and physical map for maize. To display this integrated map, we have developed iMap. iMap has three main components: a relational database (iMapDB), a map graphic browser (iMap Viewer) and a search utility (iMap Search). iMapDB is populated with current genetic and physical map data, describing relationships among genetic loci, molecular markers and bacterial artificial chromosome (BAC) contigs. The database also contains integrated information produced by applying a set of anchoring rules to assign BAC contigs to specific locations on the genetic map. The iMap Viewer and iMap Search functions are combined in the user interface to allow viewing and retrieving many types of genetic and physical map data. The iMap Viewer features side-by-side chromosome-based displays of the genetic map and associated BAC contigs. For each genetic locus, information about marker type or contig can be viewed via pop-up windows that feature links to external data resources. Searches can be conducted for genetic locus, probe or sequence accession number; search results include relevant map positions, anchored BAC contigs and links to the graphical display of relevant chromosomes. 2003-11-01 2018-11-14T06:51:23Z 2018-11-14T06:51:23Z Journal Article https://hdl.handle.net/10568/97993 en Open Access Oxford University Press Fang, Z., Cone, K., Sanchez-Villeda, H., Polacco, M., McMullen, M., Schroeder, S., ... & Bi, I. V. (2003). iMap: a database-driven utility to integrate and access the genetic and physical maps of maize. Bioinformatics, 19(16), 2105-2111. |
| spellingShingle | maize genetic maps Fang, Z. Cone, K. Sánchez Villeda, H. Polacco, M. McMullen, M. Schroeder, S. Gardiner, J. Davis, G. Havermann, S. Yim, Y. Vroh Bi, Irie Coe, E. Bi, I.V. iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title | iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title_full | iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title_fullStr | iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title_full_unstemmed | iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title_short | iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize |
| title_sort | imap a databasedriven utility to integrate and access the genetic and physical maps of maize |
| topic | maize genetic maps |
| url | https://hdl.handle.net/10568/97993 |
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