A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers
Sweetpotato (Ipomoea batatas (L.) Lam.), a hexaploid outcrossing crop, is an important staple and food security crop in developing countries in Africa and Asia. The availability of genomic resources for sweetpotato is in striking contrast to its importance for human nutrition. Previously existing se...
| Main Authors: | , , , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Springer
2010
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/97198 |
| _version_ | 1855523045694767104 |
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| author | Schafleitner, R. Tincopa, L.R. Palomino, O. Rossel, G. Robles, R. Alagon, R. Rivera, C. Quispe, C. Rojas, L. Pacheco, J. Solis, J. Cerna, D. Kim, J.Y. Hou, J. Simon, R. |
| author_browse | Alagon, R. Cerna, D. Hou, J. Kim, J.Y. Pacheco, J. Palomino, O. Quispe, C. Rivera, C. Robles, R. Rojas, L. Rossel, G. Schafleitner, R. Simon, R. Solis, J. Tincopa, L.R. |
| author_facet | Schafleitner, R. Tincopa, L.R. Palomino, O. Rossel, G. Robles, R. Alagon, R. Rivera, C. Quispe, C. Rojas, L. Pacheco, J. Solis, J. Cerna, D. Kim, J.Y. Hou, J. Simon, R. |
| author_sort | Schafleitner, R. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Sweetpotato (Ipomoea batatas (L.) Lam.), a hexaploid outcrossing crop, is an important staple and food security crop in developing countries in Africa and Asia. The availability of genomic resources for sweetpotato is in striking contrast to its importance for human nutrition. Previously existing sequence data were restricted to around 22,000 expressed sequence tag (EST) sequences and ~ 1,500 GenBank sequences. We have used 454 pyrosequencing to augment the available gene sequence information to enhance functional genomics and marker design for this plant species. |
| format | Journal Article |
| id | CGSpace97198 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2010 |
| publishDateRange | 2010 |
| publishDateSort | 2010 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace971982025-11-29T05:22:14Z A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers Schafleitner, R. Tincopa, L.R. Palomino, O. Rossel, G. Robles, R. Alagon, R. Rivera, C. Quispe, C. Rojas, L. Pacheco, J. Solis, J. Cerna, D. Kim, J.Y. Hou, J. Simon, R. sweet potatoes genes nucleotide sequence genetic markers Sweetpotato (Ipomoea batatas (L.) Lam.), a hexaploid outcrossing crop, is an important staple and food security crop in developing countries in Africa and Asia. The availability of genomic resources for sweetpotato is in striking contrast to its importance for human nutrition. Previously existing sequence data were restricted to around 22,000 expressed sequence tag (EST) sequences and ~ 1,500 GenBank sequences. We have used 454 pyrosequencing to augment the available gene sequence information to enhance functional genomics and marker design for this plant species. 2010-12 2018-09-13T13:55:33Z 2018-09-13T13:55:33Z Journal Article https://hdl.handle.net/10568/97198 en Open Access Springer Schafleitner, R.; Tincopa, L.R.; Palomino, O.; Rossel, G.; Robles, R.; Alagon, R.; Rivera, C.; Quispe, C.; Rojas, L.; Pacheco, J.; Solis, J.; Cerna, D.; Kim, J.Y.; Hou, J.; Simon, R. 2010. A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers. BMC Genomics. ISSN 1471-2164. 11:604. 10 p. |
| spellingShingle | sweet potatoes genes nucleotide sequence genetic markers Schafleitner, R. Tincopa, L.R. Palomino, O. Rossel, G. Robles, R. Alagon, R. Rivera, C. Quispe, C. Rojas, L. Pacheco, J. Solis, J. Cerna, D. Kim, J.Y. Hou, J. Simon, R. A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title | A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title_full | A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title_fullStr | A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title_full_unstemmed | A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title_short | A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers |
| title_sort | sweetpotato gene index established by de novo assembly of pyrosequencing and sanger sequences and mining for gene based microsatellite markers |
| topic | sweet potatoes genes nucleotide sequence genetic markers |
| url | https://hdl.handle.net/10568/97198 |
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