Species composition and environmental adaptation of indigenous Chinese cattle
Indigenous Chinese cattle combine taurine and indicine origins and occupy a broad range of different environments. By 50 K SNP genotyping we found a discontinuous distribution of taurine and indicine cattle ancestries with extremes of less than 10% indicine cattle in the north and more than 90% in t...
| Main Authors: | , , , , , , , , , , , , |
|---|---|
| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Springer
2017
|
| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/96900 |
| _version_ | 1855513126180487168 |
|---|---|
| author | Yahui Gao Gautier, M. Xiangdong Ding Hao Zhang Yachun Wang Xi Wang Faruque, M.D.O. Junya Li Shaohui Ye Xiao Gou Han Jianlin Lenstra, J.A. Yi Zhang |
| author_browse | Faruque, M.D.O. Gautier, M. Han Jianlin Hao Zhang Junya Li Lenstra, J.A. Shaohui Ye Xi Wang Xiangdong Ding Xiao Gou Yachun Wang Yahui Gao Yi Zhang |
| author_facet | Yahui Gao Gautier, M. Xiangdong Ding Hao Zhang Yachun Wang Xi Wang Faruque, M.D.O. Junya Li Shaohui Ye Xiao Gou Han Jianlin Lenstra, J.A. Yi Zhang |
| author_sort | Yahui Gao |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Indigenous Chinese cattle combine taurine and indicine origins and occupy a broad range of different environments. By 50 K SNP genotyping we found a discontinuous distribution of taurine and indicine cattle ancestries with extremes of less than 10% indicine cattle in the north and more than 90% in the far south and southwest China. Model-based clustering and f4-statistics indicate introgression of both banteng and gayal into southern Chinese cattle while the sporadic yak influence in cattle in or near Tibetan area validate earlier findings of mitochondrial DNA analysis. Geographic patterns of taurine and indicine mitochondrial and Y-chromosomal DNA diversity largely agree with the autosomal cline. The geographic distribution of the genomic admixture of different bovine species is proposed to be the combined effect of prehistoric immigrations, gene flow, major rivers acting as genetic barriers, local breeding objectives and environmental adaptation. Whole-genome scan for genetic differentiation and association analyses with both environmental and morphological covariables are remarkably consistent with previous studies and identify a number of genes implicated in adaptation, which include TNFRSF19, RFX4, SP4 and several coat color genes. We propose indigenous Chinese cattle as a unique and informative resource for gene-level studies of climate adaptation in mammals. |
| format | Journal Article |
| id | CGSpace96900 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2017 |
| publishDateRange | 2017 |
| publishDateSort | 2017 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace969002025-12-08T09:54:28Z Species composition and environmental adaptation of indigenous Chinese cattle Yahui Gao Gautier, M. Xiangdong Ding Hao Zhang Yachun Wang Xi Wang Faruque, M.D.O. Junya Li Shaohui Ye Xiao Gou Han Jianlin Lenstra, J.A. Yi Zhang cattle animal breeding livestock indigenous breeds Indigenous Chinese cattle combine taurine and indicine origins and occupy a broad range of different environments. By 50 K SNP genotyping we found a discontinuous distribution of taurine and indicine cattle ancestries with extremes of less than 10% indicine cattle in the north and more than 90% in the far south and southwest China. Model-based clustering and f4-statistics indicate introgression of both banteng and gayal into southern Chinese cattle while the sporadic yak influence in cattle in or near Tibetan area validate earlier findings of mitochondrial DNA analysis. Geographic patterns of taurine and indicine mitochondrial and Y-chromosomal DNA diversity largely agree with the autosomal cline. The geographic distribution of the genomic admixture of different bovine species is proposed to be the combined effect of prehistoric immigrations, gene flow, major rivers acting as genetic barriers, local breeding objectives and environmental adaptation. Whole-genome scan for genetic differentiation and association analyses with both environmental and morphological covariables are remarkably consistent with previous studies and identify a number of genes implicated in adaptation, which include TNFRSF19, RFX4, SP4 and several coat color genes. We propose indigenous Chinese cattle as a unique and informative resource for gene-level studies of climate adaptation in mammals. 2017-11-23 2018-08-24T11:55:51Z 2018-08-24T11:55:51Z Journal Article https://hdl.handle.net/10568/96900 en Open Access Springer Yahui Gao, Gautier, M., Xiangdong Ding, Hao Zhang, Yachun Wang, Xi Wang, Faruque, M.D.O., Junya Li, Shaohui Ye, Xiao Gou, Han Jianlin, Lenstra, J.A. and Yi Zhang. 2017. Species composition and environmental adaptation of indigenous Chinese cattle. Scientific Reports 7, Article number: 16196. |
| spellingShingle | cattle animal breeding livestock indigenous breeds Yahui Gao Gautier, M. Xiangdong Ding Hao Zhang Yachun Wang Xi Wang Faruque, M.D.O. Junya Li Shaohui Ye Xiao Gou Han Jianlin Lenstra, J.A. Yi Zhang Species composition and environmental adaptation of indigenous Chinese cattle |
| title | Species composition and environmental adaptation of indigenous Chinese cattle |
| title_full | Species composition and environmental adaptation of indigenous Chinese cattle |
| title_fullStr | Species composition and environmental adaptation of indigenous Chinese cattle |
| title_full_unstemmed | Species composition and environmental adaptation of indigenous Chinese cattle |
| title_short | Species composition and environmental adaptation of indigenous Chinese cattle |
| title_sort | species composition and environmental adaptation of indigenous chinese cattle |
| topic | cattle animal breeding livestock indigenous breeds |
| url | https://hdl.handle.net/10568/96900 |
| work_keys_str_mv | AT yahuigao speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT gautierm speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT xiangdongding speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT haozhang speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT yachunwang speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT xiwang speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT faruquemdo speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT junyali speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT shaohuiye speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT xiaogou speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT hanjianlin speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT lenstraja speciescompositionandenvironmentaladaptationofindigenouschinesecattle AT yizhang speciescompositionandenvironmentaladaptationofindigenouschinesecattle |