Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras
Application of field based high-throughput phenotyping (FB-HTP) methods for monitoring plant performance in real field conditions has a high potential to accelerate the breeding process. In this paper, we discuss the use of a simple tower based remote sensing platform using modified single-lens refl...
| Main Authors: | , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
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Elsevier
2017
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/79357 |
| _version_ | 1855528461642235904 |
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| author | Naito, Hiroki Ogawa, Satoshi Valencia Ortiz, Milton Orlando Mohri, Hiroki Urano, Yutaka Hosoi, Fumiki Shimizu, Yo Chavez, Alba L. Ishitani, Manabu Selvaraj, Michael Gomez Omasa, Kenji |
| author_browse | Chavez, Alba L. Hosoi, Fumiki Ishitani, Manabu Mohri, Hiroki Naito, Hiroki Ogawa, Satoshi Omasa, Kenji Selvaraj, Michael Gomez Shimizu, Yo Urano, Yutaka Valencia Ortiz, Milton Orlando |
| author_facet | Naito, Hiroki Ogawa, Satoshi Valencia Ortiz, Milton Orlando Mohri, Hiroki Urano, Yutaka Hosoi, Fumiki Shimizu, Yo Chavez, Alba L. Ishitani, Manabu Selvaraj, Michael Gomez Omasa, Kenji |
| author_sort | Naito, Hiroki |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Application of field based high-throughput phenotyping (FB-HTP) methods for monitoring plant performance in real field conditions has a high potential to accelerate the breeding process. In this paper, we discuss the use of a simple tower based remote sensing platform using modified single-lens reflex cameras for phenotyping yield traits in rice under different nitrogen (N) treatments over three years. This tower based phenotyping platform has the advantages of simplicity, ease and stability in terms of introduction, maintenance and continual operation under field conditions. Out of six phenological stages of rice analyzed, the flowering stage was the most useful in the estimation of yield performance under field conditions. We found a high correlation between several vegetation indices (simple ratio (SR), normalized difference vegetation index (NDVI), transformed vegetation index (TVI), corrected transformed vegetation index (CTVI), soil-adjusted vegetation index (SAVI) and modified soil-adjusted vegetation index (MSAVI)) and multiple yield traits (panicle number, grain weight and shoot biomass) across a three trials. Among all of the indices studied, SR exhibited the best performance in regards to the estimation of grain weight (R2 = 0.80). Under our tower-based field phenotyping system (TBFPS), we identified quantitative trait loci (QTL) for yield related traits using a mapping population of chromosome segment substitution lines (CSSLs) and a single nucleotide polymorphism data set. Our findings suggest the TBFPS can be useful for the estimation of yield performance during early crop development. This can be a major opportunity for rice breeders whom desire high throughput phenotypic selection for yield performance traits. |
| format | Journal Article |
| id | CGSpace79357 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2017 |
| publishDateRange | 2017 |
| publishDateSort | 2017 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | CGSpace793572025-11-12T05:56:22Z Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras Naito, Hiroki Ogawa, Satoshi Valencia Ortiz, Milton Orlando Mohri, Hiroki Urano, Yutaka Hosoi, Fumiki Shimizu, Yo Chavez, Alba L. Ishitani, Manabu Selvaraj, Michael Gomez Omasa, Kenji breeding remote sensing vegetation index rice yield Application of field based high-throughput phenotyping (FB-HTP) methods for monitoring plant performance in real field conditions has a high potential to accelerate the breeding process. In this paper, we discuss the use of a simple tower based remote sensing platform using modified single-lens reflex cameras for phenotyping yield traits in rice under different nitrogen (N) treatments over three years. This tower based phenotyping platform has the advantages of simplicity, ease and stability in terms of introduction, maintenance and continual operation under field conditions. Out of six phenological stages of rice analyzed, the flowering stage was the most useful in the estimation of yield performance under field conditions. We found a high correlation between several vegetation indices (simple ratio (SR), normalized difference vegetation index (NDVI), transformed vegetation index (TVI), corrected transformed vegetation index (CTVI), soil-adjusted vegetation index (SAVI) and modified soil-adjusted vegetation index (MSAVI)) and multiple yield traits (panicle number, grain weight and shoot biomass) across a three trials. Among all of the indices studied, SR exhibited the best performance in regards to the estimation of grain weight (R2 = 0.80). Under our tower-based field phenotyping system (TBFPS), we identified quantitative trait loci (QTL) for yield related traits using a mapping population of chromosome segment substitution lines (CSSLs) and a single nucleotide polymorphism data set. Our findings suggest the TBFPS can be useful for the estimation of yield performance during early crop development. This can be a major opportunity for rice breeders whom desire high throughput phenotypic selection for yield performance traits. 2017-03 2017-01-23T15:59:45Z 2017-01-23T15:59:45Z Journal Article https://hdl.handle.net/10568/79357 en Open Access application/pdf Elsevier Naito, Hiroki; Ogawa, Satoshi; Valencia, Milton Orlando; Mohri, Hiroki; Urano, Yutaka; Hosoi, Fumiki; Shimizu, Yo; Chavez, Alba Lucia; Ishitani, Manabu; Gomez Selvaraj, Michael; Omasa, Kenji. 2017. Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras . ISPRS Journal of Photogrammetry and Remote Sensing 125: 50-62. |
| spellingShingle | breeding remote sensing vegetation index rice yield Naito, Hiroki Ogawa, Satoshi Valencia Ortiz, Milton Orlando Mohri, Hiroki Urano, Yutaka Hosoi, Fumiki Shimizu, Yo Chavez, Alba L. Ishitani, Manabu Selvaraj, Michael Gomez Omasa, Kenji Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title | Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title_full | Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title_fullStr | Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title_full_unstemmed | Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title_short | Estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower-based field phenotyping system with modified single-lens reflex cameras |
| title_sort | estimating rice yield related traits and quantitative trait loci analysis under different nitrogen treatments using a simple tower based field phenotyping system with modified single lens reflex cameras |
| topic | breeding remote sensing vegetation index rice yield |
| url | https://hdl.handle.net/10568/79357 |
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