Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting
The study of gene families is an important field of comparative genomics, allowing, by the analysis of evolutionary history, to identify homology relationships, gene losses and to help in annotation transfers. The addition of metabolic information improves the identification of candidate genes by ad...
| Autores principales: | , , , , , , , , , |
|---|---|
| Formato: | Conference Paper |
| Lenguaje: | Inglés |
| Publicado: |
2016
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/77318 |
| _version_ | 1855527330381824000 |
|---|---|
| author | Larivière, D. Couvin, D. Droc, Gaëtan Lorenzo, G. Guignon, Valentin Rouard, M. Lyons, E. This, D. Bocs, S. Dufayard, Jean-François |
| author_browse | Bocs, S. Couvin, D. Droc, Gaëtan Dufayard, Jean-François Guignon, Valentin Larivière, D. Lorenzo, G. Lyons, E. Rouard, M. This, D. |
| author_facet | Larivière, D. Couvin, D. Droc, Gaëtan Lorenzo, G. Guignon, Valentin Rouard, M. Lyons, E. This, D. Bocs, S. Dufayard, Jean-François |
| author_sort | Larivière, D. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The study of gene families is an important field of comparative genomics, allowing, by the analysis of evolutionary history, to identify homology relationships, gene losses and to help in annotation transfers. The addition of metabolic information improves the identification of candidate genes by addition of functional and gene network data. We propose new web systems to facilitate and improve the analysis of gene family for the search of candidate genes in plants. GenFam )http://genfam.southgreen.fr/) is dedicated to the manual and precise analysis of gene families and includes specific workflows running under a Galaxy platform, allowing to gather several data sources, analysis and visualization tools, in order to (i) build custom families (ii) run analysis workflows dedicated to the analysis of gene families (iii) visualize analysis results and functional evidences through a dedicated visualization dashboard. |
| format | Conference Paper |
| id | CGSpace77318 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2016 |
| publishDateRange | 2016 |
| publishDateSort | 2016 |
| record_format | dspace |
| spelling | CGSpace773182025-11-05T07:15:23Z Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting Larivière, D. Couvin, D. Droc, Gaëtan Lorenzo, G. Guignon, Valentin Rouard, M. Lyons, E. This, D. Bocs, S. Dufayard, Jean-François family genomes data The study of gene families is an important field of comparative genomics, allowing, by the analysis of evolutionary history, to identify homology relationships, gene losses and to help in annotation transfers. The addition of metabolic information improves the identification of candidate genes by addition of functional and gene network data. We propose new web systems to facilitate and improve the analysis of gene family for the search of candidate genes in plants. GenFam )http://genfam.southgreen.fr/) is dedicated to the manual and precise analysis of gene families and includes specific workflows running under a Galaxy platform, allowing to gather several data sources, analysis and visualization tools, in order to (i) build custom families (ii) run analysis workflows dedicated to the analysis of gene families (iii) visualize analysis results and functional evidences through a dedicated visualization dashboard. 2016 2016-10-14T13:36:33Z 2016-10-14T13:36:33Z Conference Paper https://hdl.handle.net/10568/77318 en Open Access application/pdf Larivière, D.; Couvin, D.; Droc, G.; Lorenzo, J.; Guignon, V.; Rouard, M.; Lyons, E.; This, D.; Bocs, S.; Dufayard, J.F. (2016) Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting. [Abstract] presented at Journees Ouvertes de Biologie Informatique & Mathematiques (JOBIM), 28-30 Juin, 2016, Lyon. 1 p. |
| spellingShingle | family genomes data Larivière, D. Couvin, D. Droc, Gaëtan Lorenzo, G. Guignon, Valentin Rouard, M. Lyons, E. This, D. Bocs, S. Dufayard, Jean-François Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title | Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title_full | Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title_fullStr | Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title_full_unstemmed | Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title_short | Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| title_sort | comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting |
| topic | family genomes data |
| url | https://hdl.handle.net/10568/77318 |
| work_keys_str_mv | AT lariviered comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT couvind comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT drocgaetan comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT lorenzog comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT guignonvalentin comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT rouardm comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT lyonse comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT thisd comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT bocss comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting AT dufayardjeanfrancois comparativegenomicsofgenefamiliesinrelationwithmetabolicpathwaysforgenecandidateshighlighting |