Development of genomic simple sequence repeat markers for yam
Yam ( Dioscorea spp.) is a major staple crop widely cultivated for its starchy tubers. To date, very few marker resources are publicly avail - able as tools for genetic and genomic studies of this economically important crop. In this study, 90 simple sequence repeat (SSR) markers were developed from...
| Autores principales: | , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Wiley
2015
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/74426 |
| _version_ | 1855518914430107648 |
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| author | Tamiru, M. Yamanaka, S. Mitsuoka, C. Babil, P. Takagi, H. López Montes, Antonio José Sartie, A.M. Asiedu, Robert Terauchi, R. |
| author_browse | Asiedu, Robert Babil, P. López Montes, Antonio José Mitsuoka, C. Sartie, A.M. Takagi, H. Tamiru, M. Terauchi, R. Yamanaka, S. |
| author_facet | Tamiru, M. Yamanaka, S. Mitsuoka, C. Babil, P. Takagi, H. López Montes, Antonio José Sartie, A.M. Asiedu, Robert Terauchi, R. |
| author_sort | Tamiru, M. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Yam ( Dioscorea spp.) is a major staple crop widely cultivated for its starchy tubers. To date, very few marker resources are publicly avail - able as tools for genetic and genomic studies of this economically important crop. In this study, 90 simple sequence repeat (SSR) markers were developed from an enriched genomic library of yellow Guinea yam ( D. cayenensis Lam.). Cross- amplification revealed that 85 (94.4%) and 51 (56.7%) of these SSRs could be successfully transferred to the two major cultivated species of D. rotundata Poir. and D. alata L., respec - tively. Polymorphisms in 30 markers selected on the basis of reliability and reproducibility of DNA bands were evaluated using a panel of 12 D. cayenensis , 48 D. rotundata , and 48 D. alata accessions. Accordingly, number of alleles per locus ranged from 2 to 8 in D. cayenensis (mean = 3.9), 3 to 30 in D. rotundata (mean = 13.9), and 2 to 22 in D. alata (mean = 12.1). The average observed and expected heterozygosi - ties were 0.156 and 0.634 ( D. cayenensis ), 0.326 and 0.853 ( D. rotundata ), and 0.247 and 0.836 ( D. alata ), respectively. Clustering based on six SSRs that were polymorphic in at least four of the five cultivated Dioscorea species studied, including D. cayenensis , D. rotundata , D. alata , D. dumetorum (Kunth) Pax., and D. bulbifera L., detected groups consistent with the phyloge - netic relationships of the species except for D. dumetorum . These new SSR markers are invalu - able resources for applications such as genetic diversity analysis and marker-assisted breedingYam ( Dioscorea spp.) is a major staple crop widely cultivated for its starchy tubers. To date, very few marker resources are publicly avail - able as tools for genetic and genomic studies of this economically important crop. In this study, 90 simple sequence repeat (SSR) markers were developed from an enriched genomic library of yellow Guinea yam ( D. cayenensis Lam.). Cross- amplification revealed that 85 (94.4%) and 51 (56.7%) of these SSRs could be successfully transferred to the two major cultivated species of D. rotundata Poir. and D. alata L., respec - tively. Polymorphisms in 30 markers selected on the basis of reliability and reproducibility of DNA bands were evaluated using a panel of 12 D. cayenensis , 48 D. rotundata , and 48 D. alata accessions. Accordingly, number of alleles per locus ranged from 2 to 8 in D. cayenensis (mean = 3.9), 3 to 30 in D. rotundata (mean = 13.9), and 2 to 22 in D. alata (mean = 12.1). The average observed and expected heterozygosi - ties were 0.156 and 0.634 ( D. cayenensis ), 0.326 and 0.853 ( D. rotundata ), and 0.247 and 0.836 ( D. alata ), respectively. Clustering based on six SSRs that were polymorphic in at least four of the five cultivated Dioscorea species studied, including D. cayenensis , D. rotundata , D. alata , D. dumetorum (Kunth) Pax., and D. bulbifera L., detected groups consistent with the phyloge - netic relationships of the species except for D. dumetorum . These new SSR markers are invalu - able resources for applications such as genetic diversity analysis and marker-assisted breeding |
| format | Journal Article |
| id | CGSpace74426 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2015 |
| publishDateRange | 2015 |
| publishDateSort | 2015 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | CGSpace744262024-08-27T10:35:12Z Development of genomic simple sequence repeat markers for yam Tamiru, M. Yamanaka, S. Mitsuoka, C. Babil, P. Takagi, H. López Montes, Antonio José Sartie, A.M. Asiedu, Robert Terauchi, R. simple sequence repeats genomic yams Yam ( Dioscorea spp.) is a major staple crop widely cultivated for its starchy tubers. To date, very few marker resources are publicly avail - able as tools for genetic and genomic studies of this economically important crop. In this study, 90 simple sequence repeat (SSR) markers were developed from an enriched genomic library of yellow Guinea yam ( D. cayenensis Lam.). Cross- amplification revealed that 85 (94.4%) and 51 (56.7%) of these SSRs could be successfully transferred to the two major cultivated species of D. rotundata Poir. and D. alata L., respec - tively. Polymorphisms in 30 markers selected on the basis of reliability and reproducibility of DNA bands were evaluated using a panel of 12 D. cayenensis , 48 D. rotundata , and 48 D. alata accessions. Accordingly, number of alleles per locus ranged from 2 to 8 in D. cayenensis (mean = 3.9), 3 to 30 in D. rotundata (mean = 13.9), and 2 to 22 in D. alata (mean = 12.1). The average observed and expected heterozygosi - ties were 0.156 and 0.634 ( D. cayenensis ), 0.326 and 0.853 ( D. rotundata ), and 0.247 and 0.836 ( D. alata ), respectively. Clustering based on six SSRs that were polymorphic in at least four of the five cultivated Dioscorea species studied, including D. cayenensis , D. rotundata , D. alata , D. dumetorum (Kunth) Pax., and D. bulbifera L., detected groups consistent with the phyloge - netic relationships of the species except for D. dumetorum . These new SSR markers are invalu - able resources for applications such as genetic diversity analysis and marker-assisted breedingYam ( Dioscorea spp.) is a major staple crop widely cultivated for its starchy tubers. To date, very few marker resources are publicly avail - able as tools for genetic and genomic studies of this economically important crop. In this study, 90 simple sequence repeat (SSR) markers were developed from an enriched genomic library of yellow Guinea yam ( D. cayenensis Lam.). Cross- amplification revealed that 85 (94.4%) and 51 (56.7%) of these SSRs could be successfully transferred to the two major cultivated species of D. rotundata Poir. and D. alata L., respec - tively. Polymorphisms in 30 markers selected on the basis of reliability and reproducibility of DNA bands were evaluated using a panel of 12 D. cayenensis , 48 D. rotundata , and 48 D. alata accessions. Accordingly, number of alleles per locus ranged from 2 to 8 in D. cayenensis (mean = 3.9), 3 to 30 in D. rotundata (mean = 13.9), and 2 to 22 in D. alata (mean = 12.1). The average observed and expected heterozygosi - ties were 0.156 and 0.634 ( D. cayenensis ), 0.326 and 0.853 ( D. rotundata ), and 0.247 and 0.836 ( D. alata ), respectively. Clustering based on six SSRs that were polymorphic in at least four of the five cultivated Dioscorea species studied, including D. cayenensis , D. rotundata , D. alata , D. dumetorum (Kunth) Pax., and D. bulbifera L., detected groups consistent with the phyloge - netic relationships of the species except for D. dumetorum . These new SSR markers are invalu - able resources for applications such as genetic diversity analysis and marker-assisted breeding 2015-09 2016-05-25T11:59:10Z 2016-05-25T11:59:10Z Journal Article https://hdl.handle.net/10568/74426 en Open Access application/octet-stream Wiley Tamiru, M., Yamanaka, S., Mitsuoka, C., Babil, P., Takagi, H., Lopez-Montes, A., ... & Terauchi, R. (2015). Development of genomic simple sequence repeat markers for Yam. Crop Science, 55(5), 2191-2200. |
| spellingShingle | simple sequence repeats genomic yams Tamiru, M. Yamanaka, S. Mitsuoka, C. Babil, P. Takagi, H. López Montes, Antonio José Sartie, A.M. Asiedu, Robert Terauchi, R. Development of genomic simple sequence repeat markers for yam |
| title | Development of genomic simple sequence repeat markers for yam |
| title_full | Development of genomic simple sequence repeat markers for yam |
| title_fullStr | Development of genomic simple sequence repeat markers for yam |
| title_full_unstemmed | Development of genomic simple sequence repeat markers for yam |
| title_short | Development of genomic simple sequence repeat markers for yam |
| title_sort | development of genomic simple sequence repeat markers for yam |
| topic | simple sequence repeats genomic yams |
| url | https://hdl.handle.net/10568/74426 |
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