The proteome profile of embryogenic cell suspensions of Coffea arabica L.
Somatic embryogenesis, is a process by which new viable embryos are produced from somatic tissues. Somatic embryogenesis is not only a useful biotechnological tool for the massive clonal propagation and genetic engineering but it also allows to obtain fundamental knowledge about the molecular change...
| Main Authors: | , , , |
|---|---|
| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Wiley
2016
|
| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/73379 |
| _version_ | 1855539485987569664 |
|---|---|
| author | Campos, N. Paiva, L. Panis, Bartholomeus Carpentier, Sebastien C. |
| author_browse | Campos, N. Carpentier, Sebastien C. Paiva, L. Panis, Bartholomeus |
| author_facet | Campos, N. Paiva, L. Panis, Bartholomeus Carpentier, Sebastien C. |
| author_sort | Campos, N. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Somatic embryogenesis, is a process by which new viable embryos are produced from somatic tissues. Somatic embryogenesis is not only a useful biotechnological tool for the massive clonal propagation and genetic engineering but it also allows to obtain fundamental knowledge about the molecular changes that take place during embryogenesis. We present the proteome profile of two embryogenic cell suspensions. We identified 1052 non‐redundant proteins. We present their known GO annotations and show two protein networks sharing the GO annotations related to stress and embryogenic capacity via the free program Cytoscape. To our knowledge these results give the first high‐throughput proteome description of embryogenic cell suspensions and provide new information about somatic embryos for the whole plant community. The published proteome is a first step toward understanding somatic embryogenesis in coffee and toward a better annotation of proteins in an important non‐model crop. All data are available via ProteomeXchange with identifier PXD002963. |
| format | Journal Article |
| id | CGSpace73379 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2016 |
| publishDateRange | 2016 |
| publishDateSort | 2016 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | CGSpace733792025-12-08T09:54:28Z The proteome profile of embryogenic cell suspensions of Coffea arabica L. Campos, N. Paiva, L. Panis, Bartholomeus Carpentier, Sebastien C. embryonic development somatic embryos proteins coffea Somatic embryogenesis, is a process by which new viable embryos are produced from somatic tissues. Somatic embryogenesis is not only a useful biotechnological tool for the massive clonal propagation and genetic engineering but it also allows to obtain fundamental knowledge about the molecular changes that take place during embryogenesis. We present the proteome profile of two embryogenic cell suspensions. We identified 1052 non‐redundant proteins. We present their known GO annotations and show two protein networks sharing the GO annotations related to stress and embryogenic capacity via the free program Cytoscape. To our knowledge these results give the first high‐throughput proteome description of embryogenic cell suspensions and provide new information about somatic embryos for the whole plant community. The published proteome is a first step toward understanding somatic embryogenesis in coffee and toward a better annotation of proteins in an important non‐model crop. All data are available via ProteomeXchange with identifier PXD002963. 2016-03 2016-05-12T13:18:36Z 2016-05-12T13:18:36Z Journal Article https://hdl.handle.net/10568/73379 en Limited Access application/pdf Wiley Campos, N.; Paiva, L.; Panis, B.; Carpentier, S. (2016) The proteome profile of embryogenic cell suspensions of Coffea arabica L. Proteomics 16 p. 1001–1005. ISSN:1615-9853 |
| spellingShingle | embryonic development somatic embryos proteins coffea Campos, N. Paiva, L. Panis, Bartholomeus Carpentier, Sebastien C. The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title | The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title_full | The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title_fullStr | The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title_full_unstemmed | The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title_short | The proteome profile of embryogenic cell suspensions of Coffea arabica L. |
| title_sort | proteome profile of embryogenic cell suspensions of coffea arabica l |
| topic | embryonic development somatic embryos proteins coffea |
| url | https://hdl.handle.net/10568/73379 |
| work_keys_str_mv | AT camposn theproteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT paival theproteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT panisbartholomeus theproteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT carpentiersebastienc theproteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT camposn proteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT paival proteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT panisbartholomeus proteomeprofileofembryogeniccellsuspensionsofcoffeaarabical AT carpentiersebastienc proteomeprofileofembryogeniccellsuspensionsofcoffeaarabical |