The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
David Bertioli and colleagues report the genomes of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut, Arachis hypogaea. Their analyses are a first step in understanding the evolution of the peanut's tetraploid genome. Cultivated peanut (Arachis hypogaea) is an allo...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2016
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/72653 |
| _version_ | 1855526965193211904 |
|---|---|
| author | Bertioli, D.J. Cannon, Steven B. Froenicke, L. Huang, G. Farmer, Andrew D. Cannon, Ethalinda K.S. Liu, X. Gao, D. Clevenger, J. Dash, S. Ren, L. Moretzsohn, K. Huang, W. Vidigal, B. Abernathy, B. Chu, Y. Niederhuth, C.E. Umale, P. Araújo, A.C.G. Kozik, A. Kim, K.D. Burow, Mark D Varshney, Rajeev K. Wang, X. Zhang, X. Barkley, N.A. Guimarães, P.M. Isobe, S. Guo, B. Liao, B. Stalker, H.T. Schmitz, R.J. Scheffler, Brian E. Leal-Bertioli, S.C.M. Xun, X. Jackson, S.A. Michelmore, R. Ozias-Akins, P. |
| author_browse | Abernathy, B. Araújo, A.C.G. Barkley, N.A. Bertioli, D.J. Burow, Mark D Cannon, Ethalinda K.S. Cannon, Steven B. Chu, Y. Clevenger, J. Dash, S. Farmer, Andrew D. Froenicke, L. Gao, D. Guimarães, P.M. Guo, B. Huang, G. Huang, W. Isobe, S. Jackson, S.A. Kim, K.D. Kozik, A. Leal-Bertioli, S.C.M. Liao, B. Liu, X. Michelmore, R. Moretzsohn, K. Niederhuth, C.E. Ozias-Akins, P. Ren, L. Scheffler, Brian E. Schmitz, R.J. Stalker, H.T. Umale, P. Varshney, Rajeev K. Vidigal, B. Wang, X. Xun, X. Zhang, X. |
| author_facet | Bertioli, D.J. Cannon, Steven B. Froenicke, L. Huang, G. Farmer, Andrew D. Cannon, Ethalinda K.S. Liu, X. Gao, D. Clevenger, J. Dash, S. Ren, L. Moretzsohn, K. Huang, W. Vidigal, B. Abernathy, B. Chu, Y. Niederhuth, C.E. Umale, P. Araújo, A.C.G. Kozik, A. Kim, K.D. Burow, Mark D Varshney, Rajeev K. Wang, X. Zhang, X. Barkley, N.A. Guimarães, P.M. Isobe, S. Guo, B. Liao, B. Stalker, H.T. Schmitz, R.J. Scheffler, Brian E. Leal-Bertioli, S.C.M. Xun, X. Jackson, S.A. Michelmore, R. Ozias-Akins, P. |
| author_sort | Bertioli, D.J. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | David Bertioli and colleagues report the genomes of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut, Arachis hypogaea. Their analyses are a first step in understanding the evolution of the peanut's tetraploid genome. Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes of a total size of ∼2.7 Gb. This makes the assembly of chromosomal pseudomolecules very challenging. As a foundation to understanding the genome of cultivated peanut, we report the genome sequences of its diploid ancestors (Arachis duranensis and Arachis ipaensis). We show that these genomes are similar to cultivated peanut's A and B subgenomes and use them to identify candidate disease resistance genes, to guide tetraploid transcript assemblies and to detect genetic exchange between cultivated peanut's subgenomes. On the basis of remarkably high DNA identity of the A. ipaensis genome and the B subgenome of cultivated peanut and biogeographic evidence, we conclude that A. ipaensis may be a direct descendant of the same population that contributed the B subgenome to cultivated peanut. |
| format | Journal Article |
| id | CGSpace72653 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2016 |
| publishDateRange | 2016 |
| publishDateSort | 2016 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace726532024-10-03T07:40:54Z The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut Bertioli, D.J. Cannon, Steven B. Froenicke, L. Huang, G. Farmer, Andrew D. Cannon, Ethalinda K.S. Liu, X. Gao, D. Clevenger, J. Dash, S. Ren, L. Moretzsohn, K. Huang, W. Vidigal, B. Abernathy, B. Chu, Y. Niederhuth, C.E. Umale, P. Araújo, A.C.G. Kozik, A. Kim, K.D. Burow, Mark D Varshney, Rajeev K. Wang, X. Zhang, X. Barkley, N.A. Guimarães, P.M. Isobe, S. Guo, B. Liao, B. Stalker, H.T. Schmitz, R.J. Scheffler, Brian E. Leal-Bertioli, S.C.M. Xun, X. Jackson, S.A. Michelmore, R. Ozias-Akins, P. genomes arachis David Bertioli and colleagues report the genomes of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut, Arachis hypogaea. Their analyses are a first step in understanding the evolution of the peanut's tetraploid genome. Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes of a total size of ∼2.7 Gb. This makes the assembly of chromosomal pseudomolecules very challenging. As a foundation to understanding the genome of cultivated peanut, we report the genome sequences of its diploid ancestors (Arachis duranensis and Arachis ipaensis). We show that these genomes are similar to cultivated peanut's A and B subgenomes and use them to identify candidate disease resistance genes, to guide tetraploid transcript assemblies and to detect genetic exchange between cultivated peanut's subgenomes. On the basis of remarkably high DNA identity of the A. ipaensis genome and the B subgenome of cultivated peanut and biogeographic evidence, we conclude that A. ipaensis may be a direct descendant of the same population that contributed the B subgenome to cultivated peanut. 2016-04 2016-03-17T12:09:19Z 2016-03-17T12:09:19Z Journal Article https://hdl.handle.net/10568/72653 en Open Access Springer Bertioli, D.J.; Cannon, S.B.; Froenicke, L.; Huang, G.; Farmer, A.D.; Cannon, E.K.S.; Liu, X.; Gao, D.; Clevenger, J.; Dash, S.; Ren, L.; Moretzsohn, K.; Huang, W.; Vidigal, B.; Abernathy, B.; Chu, Y.; Niederhuth, C.E.; Umale, P.; Araujo, A.C.G.; Kozik, A.; Kim, K.D.; Burow, M.D.; Varshney, R.K.; Wang, X.; Zhang, X.; Barkley, N.; Guimaraes, P.M.; Isobe, S.; Guo, B.; Liao, B.; Stalker, H.T.; Schmitz, R.J.; Scheffler, B.E.; Leal-Bertioli, S.C.M.; Xun, X.; Jackson, S.A.; Michelmore, R.; Ozias-Akins, P. 2016. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. (USA). ISSN 1061-4036. 48(4):438-446. |
| spellingShingle | genomes arachis Bertioli, D.J. Cannon, Steven B. Froenicke, L. Huang, G. Farmer, Andrew D. Cannon, Ethalinda K.S. Liu, X. Gao, D. Clevenger, J. Dash, S. Ren, L. Moretzsohn, K. Huang, W. Vidigal, B. Abernathy, B. Chu, Y. Niederhuth, C.E. Umale, P. Araújo, A.C.G. Kozik, A. Kim, K.D. Burow, Mark D Varshney, Rajeev K. Wang, X. Zhang, X. Barkley, N.A. Guimarães, P.M. Isobe, S. Guo, B. Liao, B. Stalker, H.T. Schmitz, R.J. Scheffler, Brian E. Leal-Bertioli, S.C.M. Xun, X. Jackson, S.A. Michelmore, R. Ozias-Akins, P. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title | The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title_full | The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title_fullStr | The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title_full_unstemmed | The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title_short | The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut |
| title_sort | genome sequences of arachis duranensis and arachis ipaensis the diploid ancestors of cultivated peanut |
| topic | genomes arachis |
| url | https://hdl.handle.net/10568/72653 |
| work_keys_str_mv | AT bertiolidj thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT cannonstevenb thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT froenickel thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT huangg thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT farmerandrewd thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT cannonethalindaks thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT liux thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT gaod thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT clevengerj thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT dashs thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT renl thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT moretzsohnk thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT huangw thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT vidigalb thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT abernathyb thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT chuy thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT niederhuthce thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT umalep thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT araujoacg thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT kozika thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT kimkd thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT burowmarkd thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT varshneyrajeevk thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT wangx thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT zhangx thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT barkleyna thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT guimaraespm thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT isobes thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT guob thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT liaob thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT stalkerht thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT schmitzrj thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT schefflerbriane thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT lealbertioliscm thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT xunx thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT jacksonsa thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT michelmorer thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT oziasakinsp thegenomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT bertiolidj genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT cannonstevenb genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT froenickel genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT huangg genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT farmerandrewd genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT cannonethalindaks genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT liux genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT gaod genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT clevengerj genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT dashs genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT renl genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT moretzsohnk genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT huangw genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT vidigalb genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT abernathyb genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT chuy genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT niederhuthce genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT umalep genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT araujoacg genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT kozika genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT kimkd genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT burowmarkd genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT varshneyrajeevk genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT wangx genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT zhangx genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT barkleyna genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT guimaraespm genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT isobes genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT guob genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT liaob genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT stalkerht genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT schmitzrj genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT schefflerbriane genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT lealbertioliscm genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT xunx genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT jacksonsa genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT michelmorer genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut AT oziasakinsp genomesequencesofarachisduranensisandarachisipaensisthediploidancestorsofcultivatedpeanut |