The BioMart community portal: An innovative alternative to large, centralized data repositories
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biologi...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Oxford University Press
2015
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/69105 |
| _version_ | 1855520111714107392 |
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| author | Smedley, D. Haider, S. Durinck, S. Pandini, L. Provero, P. Allen, J. Arnaiz, O. Hamza Awedh, M. Baldock, R. Barbiera, R. Bardou, P. Beck, T. Blake, A. Bonierbale, Merideth W. Brookes, A.J. Bucci, G. Buetti, I. Burge, S. Cabau, C. Carlson, J.W. Chelala, C. Chrysostomou, C. Cittaro, C. Collin, O. Córdova, R. Cutts, R.J. Dassi, E. Genova, A. di Djari, A. Esposito, A. Estrella, H. Eyras, E. Fernández Banet, J. Forbes, S. Free, R.C. Fujisawa, T. Gadaleta, M. García Manteiga, J.M. Goodstein, D. Gray, K. Guerra-Assuncao, J.A. Haggarty, B. Han, D.J. Han, B.W. Harris, T. Harshbarger, J. Hastings, R.K. Hayes, R.D. Hoede, C. Hu, S. Hu, Z.l. Hutchins, L. Kan, Z. Kawaji, H. Keliet, A. Kerhornou, A. Kim, S. Kinsella, R. Klopp, C. Kong, L. Lawson, D. Lazarevic, D. Lee, J.H. Letellier, T. Li, C.Y. Luo, J. Maas, A. Mariette, J. Maurel, T. Merella, S. Mohamed, A.M. Moreews, F. Nabihoudine, I. Ndegwa, N. Noirot, C. Pérez Llamas, C. Primig, M. Quattrone, A. Quesneville, H. Rambaldi, D. Reecy, J. Riba, M. Rosanoff, S. Ali Saddiq, A. Salas, A. Sallou, O. Shepherd, R. Simon, R. Sperling, L. Spooner, W. Staines, D.M. Steinbach, D. Stone, K. Stupka, E. Teague, W. Dayem Ullah, A.Z. Wang, J. Wong-Erasmus, M. Youens-Clark, K. Zadissa, A. Zhang, S.J. Kasprzyk, A. |
| author_browse | Ali Saddiq, A. Allen, J. Arnaiz, O. Baldock, R. Barbiera, R. Bardou, P. Beck, T. Blake, A. Bonierbale, Merideth W. Brookes, A.J. Bucci, G. Buetti, I. Burge, S. Cabau, C. Carlson, J.W. Chelala, C. Chrysostomou, C. Cittaro, C. Collin, O. Cutts, R.J. Córdova, R. Dassi, E. Dayem Ullah, A.Z. Djari, A. Durinck, S. Esposito, A. Estrella, H. Eyras, E. Fernández Banet, J. Forbes, S. Free, R.C. Fujisawa, T. Gadaleta, M. García Manteiga, J.M. Genova, A. di Goodstein, D. Gray, K. Guerra-Assuncao, J.A. Haggarty, B. Haider, S. Hamza Awedh, M. Han, B.W. Han, D.J. Harris, T. Harshbarger, J. Hastings, R.K. Hayes, R.D. Hoede, C. Hu, S. Hu, Z.l. Hutchins, L. Kan, Z. Kasprzyk, A. Kawaji, H. Keliet, A. Kerhornou, A. Kim, S. Kinsella, R. Klopp, C. Kong, L. Lawson, D. Lazarevic, D. Lee, J.H. Letellier, T. Li, C.Y. Luo, J. Maas, A. Mariette, J. Maurel, T. Merella, S. Mohamed, A.M. Moreews, F. Nabihoudine, I. Ndegwa, N. Noirot, C. Pandini, L. Primig, M. Provero, P. Pérez Llamas, C. Quattrone, A. Quesneville, H. Rambaldi, D. Reecy, J. Riba, M. Rosanoff, S. Salas, A. Sallou, O. Shepherd, R. Simon, R. Smedley, D. Sperling, L. Spooner, W. Staines, D.M. Steinbach, D. Stone, K. Stupka, E. Teague, W. Wang, J. Wong-Erasmus, M. Youens-Clark, K. Zadissa, A. Zhang, S.J. |
| author_facet | Smedley, D. Haider, S. Durinck, S. Pandini, L. Provero, P. Allen, J. Arnaiz, O. Hamza Awedh, M. Baldock, R. Barbiera, R. Bardou, P. Beck, T. Blake, A. Bonierbale, Merideth W. Brookes, A.J. Bucci, G. Buetti, I. Burge, S. Cabau, C. Carlson, J.W. Chelala, C. Chrysostomou, C. Cittaro, C. Collin, O. Córdova, R. Cutts, R.J. Dassi, E. Genova, A. di Djari, A. Esposito, A. Estrella, H. Eyras, E. Fernández Banet, J. Forbes, S. Free, R.C. Fujisawa, T. Gadaleta, M. García Manteiga, J.M. Goodstein, D. Gray, K. Guerra-Assuncao, J.A. Haggarty, B. Han, D.J. Han, B.W. Harris, T. Harshbarger, J. Hastings, R.K. Hayes, R.D. Hoede, C. Hu, S. Hu, Z.l. Hutchins, L. Kan, Z. Kawaji, H. Keliet, A. Kerhornou, A. Kim, S. Kinsella, R. Klopp, C. Kong, L. Lawson, D. Lazarevic, D. Lee, J.H. Letellier, T. Li, C.Y. Luo, J. Maas, A. Mariette, J. Maurel, T. Merella, S. Mohamed, A.M. Moreews, F. Nabihoudine, I. Ndegwa, N. Noirot, C. Pérez Llamas, C. Primig, M. Quattrone, A. Quesneville, H. Rambaldi, D. Reecy, J. Riba, M. Rosanoff, S. Ali Saddiq, A. Salas, A. Sallou, O. Shepherd, R. Simon, R. Sperling, L. Spooner, W. Staines, D.M. Steinbach, D. Stone, K. Stupka, E. Teague, W. Dayem Ullah, A.Z. Wang, J. Wong-Erasmus, M. Youens-Clark, K. Zadissa, A. Zhang, S.J. Kasprzyk, A. |
| author_sort | Smedley, D. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. |
| format | Journal Article |
| id | CGSpace69105 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2015 |
| publishDateRange | 2015 |
| publishDateSort | 2015 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace691052025-11-06T13:35:36Z The BioMart community portal: An innovative alternative to large, centralized data repositories Smedley, D. Haider, S. Durinck, S. Pandini, L. Provero, P. Allen, J. Arnaiz, O. Hamza Awedh, M. Baldock, R. Barbiera, R. Bardou, P. Beck, T. Blake, A. Bonierbale, Merideth W. Brookes, A.J. Bucci, G. Buetti, I. Burge, S. Cabau, C. Carlson, J.W. Chelala, C. Chrysostomou, C. Cittaro, C. Collin, O. Córdova, R. Cutts, R.J. Dassi, E. Genova, A. di Djari, A. Esposito, A. Estrella, H. Eyras, E. Fernández Banet, J. Forbes, S. Free, R.C. Fujisawa, T. Gadaleta, M. García Manteiga, J.M. Goodstein, D. Gray, K. Guerra-Assuncao, J.A. Haggarty, B. Han, D.J. Han, B.W. Harris, T. Harshbarger, J. Hastings, R.K. Hayes, R.D. Hoede, C. Hu, S. Hu, Z.l. Hutchins, L. Kan, Z. Kawaji, H. Keliet, A. Kerhornou, A. Kim, S. Kinsella, R. Klopp, C. Kong, L. Lawson, D. Lazarevic, D. Lee, J.H. Letellier, T. Li, C.Y. Luo, J. Maas, A. Mariette, J. Maurel, T. Merella, S. Mohamed, A.M. Moreews, F. Nabihoudine, I. Ndegwa, N. Noirot, C. Pérez Llamas, C. Primig, M. Quattrone, A. Quesneville, H. Rambaldi, D. Reecy, J. Riba, M. Rosanoff, S. Ali Saddiq, A. Salas, A. Sallou, O. Shepherd, R. Simon, R. Sperling, L. Spooner, W. Staines, D.M. Steinbach, D. Stone, K. Stupka, E. Teague, W. Dayem Ullah, A.Z. Wang, J. Wong-Erasmus, M. Youens-Clark, K. Zadissa, A. Zhang, S.J. Kasprzyk, A. data management information storage genetics The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. 2015-07-01 2015-12-04T14:28:18Z 2015-12-04T14:28:18Z Journal Article https://hdl.handle.net/10568/69105 en Open Access application/pdf Oxford University Press Smedley, D.; Haider, S.; Durinck, S.; Pandini, L.; Provero, P.; Allen, J.; Arnaiz, O.; Hamza Awedh, M.; Baldock, R.; Barbiera, R.; Bardou, P.; Beck, T.; Blake, A.; Bonierbale, M.W.; Brookes, A.J.; Bucci, G.; Buetti, I.; Burge, S.; Cabau, C.; Carlson, J.W.; Chelala, C.; Chrysostomou, C.; Cittaro, D.; Collin, O.; Cordova, R.; Cutts, R.J.; Dassi, E.; Di Genova, A.; Djari, A.; Esposito, A.; Estrella, H.; Eyras, E.; Fernandez-Banet, J.; Forbes, S.; Free, R.C.; Fujisawa, T.; Gadaleta, M.; Garcia-Manteiga, J.M.; Goodstein, D.; Gray, K.; Guerra-Assuncao, J.A.; Haggarty, B.; Han, D.J.; Han, B.W.; Harris,T.; Harshbarger, J.; Hastings, R.K.; Hayes, R.D.; Hoede, C.; Hu, S.; Hu, Z.L.; Hutchins, L.; Kan, Z.; Kawaji, H.; Keliet, A.; Kerhornou, A.; Kim, S.; Kinsella, R.; Klopp, C.; Kong, L.; Lawson, D.; Lazarevic, D.; Lee, J.H.; Letellier, T.; Li, C.Y.; Lio, P.; Liu, C.J.; Luo, J.; Maass, A.; Mariette, J.; Maurel, T.; Merella, S.; Mohamed, A.M.; Moreews, F.; Nabihoudine, I.; Ndegwa, N.; Noirot, C.; Perez-Llamas, C.; Primig, M.; Quattrone, A.; Quesneville, H.; Rambaldi, D.; Reecy, J.; Riba, M.; Rosanoff, S.; Ali Saddiq, A.; Salas, E.; Sallou, O.; Shepherd, R.; Simon, R. (CIP); Sperling, L.; Spooner, W.; Staines, D.M.; Steinbach, D.; Stone, K.; Stupka, E.; Teague, J.W.; Dayem Ullah, A.Z.; Wang, J.; Ware, D.; Wong-Erasmus, M.; Youens-Clark, K.; Zadissa, A.; Zhang, S.J.; Kasprzyk, A. 2015. The BioMart community portal: An innovative alternative to large, centralized data repositories. Nucleic Acids Research. (UK). ISSN 0305-1048. 43(W1):W589-W598. |
| spellingShingle | data management information storage genetics Smedley, D. Haider, S. Durinck, S. Pandini, L. Provero, P. Allen, J. Arnaiz, O. Hamza Awedh, M. Baldock, R. Barbiera, R. Bardou, P. Beck, T. Blake, A. Bonierbale, Merideth W. Brookes, A.J. Bucci, G. Buetti, I. Burge, S. Cabau, C. Carlson, J.W. Chelala, C. Chrysostomou, C. Cittaro, C. Collin, O. Córdova, R. Cutts, R.J. Dassi, E. Genova, A. di Djari, A. Esposito, A. Estrella, H. Eyras, E. Fernández Banet, J. Forbes, S. Free, R.C. Fujisawa, T. Gadaleta, M. García Manteiga, J.M. Goodstein, D. Gray, K. Guerra-Assuncao, J.A. Haggarty, B. Han, D.J. Han, B.W. Harris, T. Harshbarger, J. Hastings, R.K. Hayes, R.D. Hoede, C. Hu, S. Hu, Z.l. Hutchins, L. Kan, Z. Kawaji, H. Keliet, A. Kerhornou, A. Kim, S. Kinsella, R. Klopp, C. Kong, L. Lawson, D. Lazarevic, D. Lee, J.H. Letellier, T. Li, C.Y. Luo, J. Maas, A. Mariette, J. Maurel, T. Merella, S. Mohamed, A.M. Moreews, F. Nabihoudine, I. Ndegwa, N. Noirot, C. Pérez Llamas, C. Primig, M. Quattrone, A. Quesneville, H. Rambaldi, D. Reecy, J. Riba, M. Rosanoff, S. Ali Saddiq, A. Salas, A. Sallou, O. Shepherd, R. Simon, R. Sperling, L. Spooner, W. Staines, D.M. Steinbach, D. Stone, K. Stupka, E. Teague, W. Dayem Ullah, A.Z. Wang, J. Wong-Erasmus, M. Youens-Clark, K. Zadissa, A. Zhang, S.J. Kasprzyk, A. The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title | The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title_full | The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title_fullStr | The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title_full_unstemmed | The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title_short | The BioMart community portal: An innovative alternative to large, centralized data repositories |
| title_sort | biomart community portal an innovative alternative to large centralized data repositories |
| topic | data management information storage genetics |
| url | https://hdl.handle.net/10568/69105 |
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biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT estrellah biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT eyrase biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT fernandezbanetj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT forbess biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT freerc biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT fujisawat biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT gadaletam biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT garciamanteigajm biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT goodsteind biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT grayk biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT guerraassuncaoja biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT haggartyb biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT handj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hanbw biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT harrist biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT harshbargerj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hastingsrk biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hayesrd biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hoedec biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hus biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT huzl biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT hutchinsl biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kanz biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kawajih biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kelieta biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kerhornoua biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kims biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kinsellar biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kloppc biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kongl biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT lawsond biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT lazarevicd biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT leejh biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT letelliert biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT licy biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT luoj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT maasa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT mariettej biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT maurelt biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT merellas biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT mohamedam biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT moreewsf biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT nabihoudinei biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT ndegwan biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT noirotc biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT perezllamasc biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT primigm biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT quattronea biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT quesnevilleh biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT rambaldid biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT reecyj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT ribam biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT rosanoffs biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT alisaddiqa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT salasa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT sallouo biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT shepherdr biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT simonr biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT sperlingl biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT spoonerw biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stainesdm biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT steinbachd biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stonek biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stupkae biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT teaguew biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT dayemullahaz biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT wangj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT wongerasmusm biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT youensclarkk biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT zadissaa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT zhangsj biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kasprzyka biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories |