NGSEP (Next Generation Sequencing Eclipse Plugin)
NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bowti...
| Main Authors: | , , , , |
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| Format: | Software |
| Language: | Inglés |
| Published: |
2014
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/68332 |
| _version_ | 1855542261440315392 |
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| author | Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge |
| author_browse | Cruz, Daniel Felipe Duitama, Jorge Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo |
| author_facet | Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge |
| author_sort | Cruz, Daniel Felipe |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bowtie2 to perform mapping to the reference genome and other utilities such as alignments sorting, merging of variants from different samples, and functional annotation of variants. NGSEP is based on Eclipse which is one of the leading development environments for Java. Note: Since we offer different distribution alternatives for different kinds of users, the quick download (green) button may not lead you to the version of the product that you need. Please visit the web page to choose the distribution of NGSEP that better suits your data analysis environment. |
| format | Software |
| id | CGSpace68332 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2014 |
| publishDateRange | 2014 |
| publishDateSort | 2014 |
| record_format | dspace |
| spelling | CGSpace683322025-11-05T17:56:07Z NGSEP (Next Generation Sequencing Eclipse Plugin) Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge código genético genetic code biología computacional bioinformatics genotypes genotipos NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bowtie2 to perform mapping to the reference genome and other utilities such as alignments sorting, merging of variants from different samples, and functional annotation of variants. NGSEP is based on Eclipse which is one of the leading development environments for Java. Note: Since we offer different distribution alternatives for different kinds of users, the quick download (green) button may not lead you to the version of the product that you need. Please visit the web page to choose the distribution of NGSEP that better suits your data analysis environment. 2014 2015-09-29T15:20:38Z 2015-09-29T15:20:38Z Software https://hdl.handle.net/10568/68332 en Open Access application/pdf Cruz, Daniel Felipe; De la Hoz, Juan Fernando; Perea, Claudia Samantha; Quintero, Juan Camilo; Duitama, Jorge. 2014. NGSEP (Next Generation Sequencing Eclipse Plugin). Software download (Available online at http://sourceforge.net/p/ngsep/wiki/Home/). |
| spellingShingle | código genético genetic code biología computacional bioinformatics genotypes genotipos Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title | NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title_full | NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title_fullStr | NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title_full_unstemmed | NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title_short | NGSEP (Next Generation Sequencing Eclipse Plugin) |
| title_sort | ngsep next generation sequencing eclipse plugin |
| topic | código genético genetic code biología computacional bioinformatics genotypes genotipos |
| url | https://hdl.handle.net/10568/68332 |
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