Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library
To organize data resulting from the phenotypic characterization of a library of 30 000 T-DNA enhancer trap (ET) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) database (http://urgi.versailles.inra.fr/OryzaTagLine/). OTL structure facilitates forward ge...
| Main Authors: | , , , , , , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Oxford University Press
2008
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/43916 |
| _version_ | 1855515538059427840 |
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| author | Larmande, Pierre Gay, C Lorieux, Mathias Perin, C. Bouniol, M Droc, Gaëtan Sallaud, C Pérez, P. Barnola, I Biderre-Petit, Corinne Martin, J. Morel, Jean-Benoit Johnson, Alexander A.T. Bourgis, Fabienne Ghesquière, Alain Ruíz, M.E. Courtois, Brigitte Guiderdoni, Emmanuel |
| author_browse | Barnola, I Biderre-Petit, Corinne Bouniol, M Bourgis, Fabienne Courtois, Brigitte Droc, Gaëtan Gay, C Ghesquière, Alain Guiderdoni, Emmanuel Johnson, Alexander A.T. Larmande, Pierre Lorieux, Mathias Martin, J. Morel, Jean-Benoit Perin, C. Pérez, P. Ruíz, M.E. Sallaud, C |
| author_facet | Larmande, Pierre Gay, C Lorieux, Mathias Perin, C. Bouniol, M Droc, Gaëtan Sallaud, C Pérez, P. Barnola, I Biderre-Petit, Corinne Martin, J. Morel, Jean-Benoit Johnson, Alexander A.T. Bourgis, Fabienne Ghesquière, Alain Ruíz, M.E. Courtois, Brigitte Guiderdoni, Emmanuel |
| author_sort | Larmande, Pierre |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | To organize data resulting from the phenotypic characterization of a library of 30 000 T-DNA enhancer trap (ET) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) database (http://urgi.versailles.inra.fr/OryzaTagLine/). OTL structure facilitates forward genetic search for specific phenotypes, putatively resulting from gene disruption, and/or for GUSA or GFP reporter gene expression patterns, reflecting ET-mediated endogenous gene detection. In the latest version, OTL gathers the detailed morpho-physiological alterations observed during field evaluation and specific screens in a first set of 13 928 lines. Detection of GUS or GFP activity in specific organ/tissues in a subset of the library is also provided. Search in OTL can be achieved through trait ontology category, organ and/or developmental stage, keywords, expression of reporter gene in specific organ/tissue as well as line identification number. OTL now contains the description of 9721 mutant phenotypic traits observed in 2636 lines and 1234 GUS or GFP expression patterns. Each insertion line is documented through a generic passport data including production records, seed stocks and FST information. 8004 and 6101 of the 13 928 lines are characterized by at least one T-DNA and one Tos17 FST, respectively that OTL links to the rice genome browser OryGenesDB. |
| format | Journal Article |
| id | CGSpace43916 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2008 |
| publishDateRange | 2008 |
| publishDateSort | 2008 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace439162024-08-27T10:34:53Z Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library Larmande, Pierre Gay, C Lorieux, Mathias Perin, C. Bouniol, M Droc, Gaëtan Sallaud, C Pérez, P. Barnola, I Biderre-Petit, Corinne Martin, J. Morel, Jean-Benoit Johnson, Alexander A.T. Bourgis, Fabienne Ghesquière, Alain Ruíz, M.E. Courtois, Brigitte Guiderdoni, Emmanuel oryza sativa rice phenotypes databases arroz fenotipos bases de datos genetics To organize data resulting from the phenotypic characterization of a library of 30 000 T-DNA enhancer trap (ET) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) database (http://urgi.versailles.inra.fr/OryzaTagLine/). OTL structure facilitates forward genetic search for specific phenotypes, putatively resulting from gene disruption, and/or for GUSA or GFP reporter gene expression patterns, reflecting ET-mediated endogenous gene detection. In the latest version, OTL gathers the detailed morpho-physiological alterations observed during field evaluation and specific screens in a first set of 13 928 lines. Detection of GUS or GFP activity in specific organ/tissues in a subset of the library is also provided. Search in OTL can be achieved through trait ontology category, organ and/or developmental stage, keywords, expression of reporter gene in specific organ/tissue as well as line identification number. OTL now contains the description of 9721 mutant phenotypic traits observed in 2636 lines and 1234 GUS or GFP expression patterns. Each insertion line is documented through a generic passport data including production records, seed stocks and FST information. 8004 and 6101 of the 13 928 lines are characterized by at least one T-DNA and one Tos17 FST, respectively that OTL links to the rice genome browser OryGenesDB. 2008-01-01 2014-10-02T08:32:56Z 2014-10-02T08:32:56Z Journal Article https://hdl.handle.net/10568/43916 en Open Access Oxford University Press |
| spellingShingle | oryza sativa rice phenotypes databases arroz fenotipos bases de datos genetics Larmande, Pierre Gay, C Lorieux, Mathias Perin, C. Bouniol, M Droc, Gaëtan Sallaud, C Pérez, P. Barnola, I Biderre-Petit, Corinne Martin, J. Morel, Jean-Benoit Johnson, Alexander A.T. Bourgis, Fabienne Ghesquière, Alain Ruíz, M.E. Courtois, Brigitte Guiderdoni, Emmanuel Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title | Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title_full | Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title_fullStr | Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title_full_unstemmed | Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title_short | Oryza tag line, a phenotypic mutant database for the génoplante rice insertion line library |
| title_sort | oryza tag line a phenotypic mutant database for the genoplante rice insertion line library |
| topic | oryza sativa rice phenotypes databases arroz fenotipos bases de datos genetics |
| url | https://hdl.handle.net/10568/43916 |
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