Molecular markers and their application to cassava breeding: past, present and future
The advent of relatively low-cost, massively parallel, high-throughput genome sequencing and the resultant availability of high density markers are revolutionizing the ways in which molecular markers can be applied to plant breeding. With the availability of the draft cassava genome sequence, the ca...
| Main Authors: | , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Springer
2012
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/43877 |
| _version_ | 1855530495671009280 |
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| author | Ferguson, Morag E. Rabbi, Ismail Y. Kim, D.J. Gedil, Melaku A Becerra López Lavelle, Luis Augusto Okogbenin, Emmanuel |
| author_browse | Becerra López Lavelle, Luis Augusto Ferguson, Morag E. Gedil, Melaku A Kim, D.J. Okogbenin, Emmanuel Rabbi, Ismail Y. |
| author_facet | Ferguson, Morag E. Rabbi, Ismail Y. Kim, D.J. Gedil, Melaku A Becerra López Lavelle, Luis Augusto Okogbenin, Emmanuel |
| author_sort | Ferguson, Morag E. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The advent of relatively low-cost, massively parallel, high-throughput genome sequencing and the resultant availability of high density markers are revolutionizing the ways in which molecular markers can be applied to plant breeding. With the availability of the draft cassava genome sequence, the cassava community is poised to take advantage of these new tools. Here we review the development of molecular markers applied to cassava breeding and describe the achievements that have been made using predominantly simple sequence repeat (SSR) markers. At this time of change, we report on the curation of 3,367 published and unpublished SSR primer pairs and provide a non-redundant database. We also describe ways in which new tools, particularly single nucleotide polymorphism (SNP) markers, can be applied to the development of high density maps and to fine mapping, association mapping, gene discovery, transcript profiling, inbred line development and the prediction of heterosis, gene mining in wild species and introgressions, and genome-wide approaches, including marker-assisted recurrent selection (MARS) and genomic selection (GS). Where applicable we describe how these tools are already being applied for amassing genetic gain in cassava. |
| format | Journal Article |
| id | CGSpace43877 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2012 |
| publishDateRange | 2012 |
| publishDateSort | 2012 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace438772024-05-01T08:18:13Z Molecular markers and their application to cassava breeding: past, present and future Ferguson, Morag E. Rabbi, Ismail Y. Kim, D.J. Gedil, Melaku A Becerra López Lavelle, Luis Augusto Okogbenin, Emmanuel manihot esculenta plant breeding selection molecular markers fitomejoramiento selección marcadores genéticos The advent of relatively low-cost, massively parallel, high-throughput genome sequencing and the resultant availability of high density markers are revolutionizing the ways in which molecular markers can be applied to plant breeding. With the availability of the draft cassava genome sequence, the cassava community is poised to take advantage of these new tools. Here we review the development of molecular markers applied to cassava breeding and describe the achievements that have been made using predominantly simple sequence repeat (SSR) markers. At this time of change, we report on the curation of 3,367 published and unpublished SSR primer pairs and provide a non-redundant database. We also describe ways in which new tools, particularly single nucleotide polymorphism (SNP) markers, can be applied to the development of high density maps and to fine mapping, association mapping, gene discovery, transcript profiling, inbred line development and the prediction of heterosis, gene mining in wild species and introgressions, and genome-wide approaches, including marker-assisted recurrent selection (MARS) and genomic selection (GS). Where applicable we describe how these tools are already being applied for amassing genetic gain in cassava. 2012-03 2014-10-02T08:32:52Z 2014-10-02T08:32:52Z Journal Article https://hdl.handle.net/10568/43877 en Limited Access Springer Ferguson, Morag E.; Rabbi, Ismail; Kim, Dong-Jin; Gedil, Melaku; Becerra López-Lavalle, Luis Augusto; Okogbenin, Emmanuel. 2012. Molecular markers and their application to cassava breeding: past, present and future . Tropical Plant Biology. 5: 95-109. |
| spellingShingle | manihot esculenta plant breeding selection molecular markers fitomejoramiento selección marcadores genéticos Ferguson, Morag E. Rabbi, Ismail Y. Kim, D.J. Gedil, Melaku A Becerra López Lavelle, Luis Augusto Okogbenin, Emmanuel Molecular markers and their application to cassava breeding: past, present and future |
| title | Molecular markers and their application to cassava breeding: past, present and future |
| title_full | Molecular markers and their application to cassava breeding: past, present and future |
| title_fullStr | Molecular markers and their application to cassava breeding: past, present and future |
| title_full_unstemmed | Molecular markers and their application to cassava breeding: past, present and future |
| title_short | Molecular markers and their application to cassava breeding: past, present and future |
| title_sort | molecular markers and their application to cassava breeding past present and future |
| topic | manihot esculenta plant breeding selection molecular markers fitomejoramiento selección marcadores genéticos |
| url | https://hdl.handle.net/10568/43877 |
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