Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia
This study evaluated P. edulis f. edulis intraspecific variation at DNA level using AFLPs and SSRs. About 60 specimens were collected from Colombian commercial plantations in the departments of Antioquia, Boyacá, Cundinamarca, Huila, Quindío and Tolima. Ten specimens were also included from Corpoica...
| Autores principales: | , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2012
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/43422 |
| _version_ | 1855520128487129088 |
|---|---|
| author | Ortíz, Diana Carolina Bohórquez Cháux, Adriana Duque E., Myriam Cristina Tohme, Joseph M. Cuéllar, David Mosquera Vasquez, Teresa |
| author_browse | Bohórquez Cháux, Adriana Cuéllar, David Duque E., Myriam Cristina Mosquera Vasquez, Teresa Ortíz, Diana Carolina Tohme, Joseph M. |
| author_facet | Ortíz, Diana Carolina Bohórquez Cháux, Adriana Duque E., Myriam Cristina Tohme, Joseph M. Cuéllar, David Mosquera Vasquez, Teresa |
| author_sort | Ortíz, Diana Carolina |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | This study evaluated P. edulis f. edulis intraspecific variation at DNA level using AFLPs and SSRs. About 60 specimens were collected from Colombian commercial plantations in the departments of Antioquia, Boyacá, Cundinamarca, Huila, Quindío and Tolima. Ten specimens were also included from Corpoica’s La Selva research center Passiflora germplasm bank. A non-commercial purple passion fruit plant and three species from the Passiflora genus (Passiflora maliformis, Passiflora edulis f. flavicarpa and Passiflora ligularis) were included as controls. The six most informative ones were selected from the initial screening of 49 different AFLP primer combinations; 52–92 DNA fragments for each combination in each genotype (total 419 fragments) were obtained by using these six combinations. 17 SSR primers reported in P. edulis f. flavicarpa and Passiflora alata were tested on purple passion fruit. Eight of them were successfully amplified but none showed polymorphism. Relationships among individuals were assessed on AFLP data using cluster analysis by Dice coefficient, UPGMA algorithm and the multiple correspondence analysis ordination method based on Greenacre measurement. The similarity coefficients ranged from 0.75 to 1.00 giving an average of 0.96 within the different purple passion fruit materials, showing low genetic variability for the purple passion fruit material used in this study. |
| format | Journal Article |
| id | CGSpace43422 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2012 |
| publishDateRange | 2012 |
| publishDateSort | 2012 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace434222024-08-27T10:35:21Z Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia Ortíz, Diana Carolina Bohórquez Cháux, Adriana Duque E., Myriam Cristina Tohme, Joseph M. Cuéllar, David Mosquera Vasquez, Teresa aflp passiflora edulis genetic variation plantations variacion genética plantaciones genetics This study evaluated P. edulis f. edulis intraspecific variation at DNA level using AFLPs and SSRs. About 60 specimens were collected from Colombian commercial plantations in the departments of Antioquia, Boyacá, Cundinamarca, Huila, Quindío and Tolima. Ten specimens were also included from Corpoica’s La Selva research center Passiflora germplasm bank. A non-commercial purple passion fruit plant and three species from the Passiflora genus (Passiflora maliformis, Passiflora edulis f. flavicarpa and Passiflora ligularis) were included as controls. The six most informative ones were selected from the initial screening of 49 different AFLP primer combinations; 52–92 DNA fragments for each combination in each genotype (total 419 fragments) were obtained by using these six combinations. 17 SSR primers reported in P. edulis f. flavicarpa and Passiflora alata were tested on purple passion fruit. Eight of them were successfully amplified but none showed polymorphism. Relationships among individuals were assessed on AFLP data using cluster analysis by Dice coefficient, UPGMA algorithm and the multiple correspondence analysis ordination method based on Greenacre measurement. The similarity coefficients ranged from 0.75 to 1.00 giving an average of 0.96 within the different purple passion fruit materials, showing low genetic variability for the purple passion fruit material used in this study. 2012-08 2014-09-24T08:42:06Z 2014-09-24T08:42:06Z Journal Article https://hdl.handle.net/10568/43422 en Limited Access Springer Ortiz, Diana Carolina; Bohórquez Cháux, Adriana; Duque E., Myriam Cristina; Tohme, Joseph M.; Cuéllar, David; Mosquera Vásquez, Teresa. 2012. Evaluating purple passion fruit (Passiflora edulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia . Genetic Resources and Crop Evolution (Netherlands) 59:1089-1099. |
| spellingShingle | aflp passiflora edulis genetic variation plantations variacion genética plantaciones genetics Ortíz, Diana Carolina Bohórquez Cháux, Adriana Duque E., Myriam Cristina Tohme, Joseph M. Cuéllar, David Mosquera Vasquez, Teresa Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title | Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title_full | Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title_fullStr | Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title_full_unstemmed | Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title_short | Evaluating purple passion fruit (Passifloraedulis Sims f. edulis) genetic variability in individuals from commercial plantations in Colombia |
| title_sort | evaluating purple passion fruit passifloraedulis sims f edulis genetic variability in individuals from commercial plantations in colombia |
| topic | aflp passiflora edulis genetic variation plantations variacion genética plantaciones genetics |
| url | https://hdl.handle.net/10568/43422 |
| work_keys_str_mv | AT ortizdianacarolina evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia AT bohorquezchauxadriana evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia AT duqueemyriamcristina evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia AT tohmejosephm evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia AT cuellardavid evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia AT mosqueravasquezteresa evaluatingpurplepassionfruitpassifloraedulissimsfedulisgeneticvariabilityinindividualsfromcommercialplantationsincolombia |