Chado Controller: advanced annotation management with a community annotation system
Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annot...
| Autores principales: | , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2012
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/35841 |
| _version_ | 1855530993426890752 |
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| author | Guignon, Valentin Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S. |
| author_browse | Alaux, M. Baurens, F.C. Bocs, S. Carver, T. Droc, Gaëtan Garsmeur, O. Guignon, Valentin Poiron, C. Rouard, M. |
| author_facet | Guignon, Valentin Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S. |
| author_sort | Guignon, Valentin |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. |
| format | Journal Article |
| id | CGSpace35841 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2012 |
| publishDateRange | 2012 |
| publishDateSort | 2012 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace358412025-11-12T05:44:35Z Chado Controller: advanced annotation management with a community annotation system Guignon, Valentin Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S. data data processing databases ontology vocabulary Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. 2012-04-01 2014-06-10T09:06:29Z 2014-06-10T09:06:29Z Journal Article https://hdl.handle.net/10568/35841 en Open Access application/pdf Oxford University Press Guignon, V.; Droc, G.; Alaux, M.; Baurens, F.C.; Garsmeur, O.; Poiron, C.; Carver, T.; Rouard, M.; Bocs, S. -2012-Chado Controller: advanced annotation management with a community annotation system-Bioinformatics 28 (7)-p. 1054-1056 |
| spellingShingle | data data processing databases ontology vocabulary Guignon, Valentin Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S. Chado Controller: advanced annotation management with a community annotation system |
| title | Chado Controller: advanced annotation management with a community annotation system |
| title_full | Chado Controller: advanced annotation management with a community annotation system |
| title_fullStr | Chado Controller: advanced annotation management with a community annotation system |
| title_full_unstemmed | Chado Controller: advanced annotation management with a community annotation system |
| title_short | Chado Controller: advanced annotation management with a community annotation system |
| title_sort | chado controller advanced annotation management with a community annotation system |
| topic | data data processing databases ontology vocabulary |
| url | https://hdl.handle.net/10568/35841 |
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