The Banana Genome Hub
Banana is one of the world's favorite fruits and one of the most important crops for developing countries. The banana reference genome sequence (Musa acuminata) was recently released. Given the taxonomic position of Musa, the completed genomic sequence has particular comparative value to provide fre...
| Autores principales: | , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2013
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| Acceso en línea: | https://hdl.handle.net/10568/35549 |
| _version_ | 1855521871999533056 |
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| author | Droc, Gaëtan Lariviere, D. Guignon, Valentin Yahiaoui, N. This, D. Garsmeur, O. Dereeper, A. Hamelin, C. Argout, X. Dufayard, Jean-François Lengelle, J. Baurens, F.C. Cenci, A. Pitollat, B. D’Hont, Angélique Ruíz, M. Rouard, M. Bocs, S. |
| author_browse | Argout, X. Baurens, F.C. Bocs, S. Cenci, A. Dereeper, A. Droc, Gaëtan Dufayard, Jean-François D’Hont, Angélique Garsmeur, O. Guignon, Valentin Hamelin, C. Lariviere, D. Lengelle, J. Pitollat, B. Rouard, M. Ruíz, M. This, D. Yahiaoui, N. |
| author_facet | Droc, Gaëtan Lariviere, D. Guignon, Valentin Yahiaoui, N. This, D. Garsmeur, O. Dereeper, A. Hamelin, C. Argout, X. Dufayard, Jean-François Lengelle, J. Baurens, F.C. Cenci, A. Pitollat, B. D’Hont, Angélique Ruíz, M. Rouard, M. Bocs, S. |
| author_sort | Droc, Gaëtan |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Banana is one of the world's favorite fruits and one of the most important crops for developing countries. The banana reference genome sequence (Musa acuminata) was recently released. Given the taxonomic position of Musa, the completed genomic sequence has particular comparative value to provide fresh insights about the evolution of the monocotyledons. The study of the banana genome has been enhanced by a number of tools and resources that allows harnessing its sequence. First, we set up essential tools such as a Community Annotation System, phylogenomics resources and metabolic pathways. Then, to support post-genomic efforts, we improved banana existing systems (e.g. web front end, query builder), we integrated available Musa data into generic systems (e.g. markers and genetic maps, synteny blocks), we have made interoperable with the banana hub, other existing systems containing Musa data (e.g. transcriptomics, rice reference genome, workflow manager) and finally, we generated new results from sequence analyses (e.g. SNP and polymorphism analysis). Several uses cases illustrate how the Banana Genome Hub can be used to study gene families. Overall, with this collaborative effort, we discuss the importance of the interoperability toward data integration between existing information systems. |
| format | Journal Article |
| id | CGSpace35549 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2013 |
| publishDateRange | 2013 |
| publishDateSort | 2013 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace355492025-11-12T05:40:47Z The Banana Genome Hub Droc, Gaëtan Lariviere, D. Guignon, Valentin Yahiaoui, N. This, D. Garsmeur, O. Dereeper, A. Hamelin, C. Argout, X. Dufayard, Jean-François Lengelle, J. Baurens, F.C. Cenci, A. Pitollat, B. D’Hont, Angélique Ruíz, M. Rouard, M. Bocs, S. data databases genomes information systems musa Banana is one of the world's favorite fruits and one of the most important crops for developing countries. The banana reference genome sequence (Musa acuminata) was recently released. Given the taxonomic position of Musa, the completed genomic sequence has particular comparative value to provide fresh insights about the evolution of the monocotyledons. The study of the banana genome has been enhanced by a number of tools and resources that allows harnessing its sequence. First, we set up essential tools such as a Community Annotation System, phylogenomics resources and metabolic pathways. Then, to support post-genomic efforts, we improved banana existing systems (e.g. web front end, query builder), we integrated available Musa data into generic systems (e.g. markers and genetic maps, synteny blocks), we have made interoperable with the banana hub, other existing systems containing Musa data (e.g. transcriptomics, rice reference genome, workflow manager) and finally, we generated new results from sequence analyses (e.g. SNP and polymorphism analysis). Several uses cases illustrate how the Banana Genome Hub can be used to study gene families. Overall, with this collaborative effort, we discuss the importance of the interoperability toward data integration between existing information systems. 2013-01-01 2014-05-05T08:44:22Z 2014-05-05T08:44:22Z Journal Article https://hdl.handle.net/10568/35549 en Open Access application/pdf Oxford University Press Droc, G.; Lariviere, D.; Guignon, V.; Yahiaoui, N.; This, D.; Garsmeur, O.; Dereeper, A.; Hamelin, C.; Argout, X.; Dufayard, J-F.; Lengelle, J.; Baurens, F-C.; Cenci, A.; Pitollat, B.; D'Hont, A.; Ruiz, M.; Rouard, M.; Bocs, S. -2013-The Banana Genome Hub-Database vol. 2013 bat 035- |
| spellingShingle | data databases genomes information systems musa Droc, Gaëtan Lariviere, D. Guignon, Valentin Yahiaoui, N. This, D. Garsmeur, O. Dereeper, A. Hamelin, C. Argout, X. Dufayard, Jean-François Lengelle, J. Baurens, F.C. Cenci, A. Pitollat, B. D’Hont, Angélique Ruíz, M. Rouard, M. Bocs, S. The Banana Genome Hub |
| title | The Banana Genome Hub |
| title_full | The Banana Genome Hub |
| title_fullStr | The Banana Genome Hub |
| title_full_unstemmed | The Banana Genome Hub |
| title_short | The Banana Genome Hub |
| title_sort | banana genome hub |
| topic | data databases genomes information systems musa |
| url | https://hdl.handle.net/10568/35549 |
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