Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations
Three F2-derived biparental doubled haploid (DH) maize populations were generated for genetic mapping of resistance to common rust. Each of the three populations has the same susceptible parent, but a different resistance donor parent. Population 1 and 3 consist of 320 lines each, population 2 consi...
| Autores principales: | , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Elsevier
2024
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/172570 |
| _version_ | 1855525889538785280 |
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| author | Loladze, Alexander Rodrigues, Francelino Petroli, Cesar Muñoz-Zavala, Carlos Naranjo, Sergio San Vicente Garcia, Felix M. Gerard, Bruno Montesinos-Lopez, Osval A. Crossa, Jose Martini, Johannes W.R. |
| author_browse | Crossa, Jose Gerard, Bruno Loladze, Alexander Martini, Johannes W.R. Montesinos-Lopez, Osval A. Muñoz-Zavala, Carlos Naranjo, Sergio Petroli, Cesar Rodrigues, Francelino San Vicente Garcia, Felix M. |
| author_facet | Loladze, Alexander Rodrigues, Francelino Petroli, Cesar Muñoz-Zavala, Carlos Naranjo, Sergio San Vicente Garcia, Felix M. Gerard, Bruno Montesinos-Lopez, Osval A. Crossa, Jose Martini, Johannes W.R. |
| author_sort | Loladze, Alexander |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Three F2-derived biparental doubled haploid (DH) maize populations were generated for genetic mapping of resistance to common rust. Each of the three populations has the same susceptible parent, but a different resistance donor parent. Population 1 and 3 consist of 320 lines each, population 2 consists of 260 lines. The DH lines were evaluated for their susceptibility to common rust in two years and with two replications in each year. For phenotyping, a visual score (VS) for susceptibility was assigned. Additionally, unmanned aerial vehicle (UAV) derived multispectral and thermal infrared data was recorded and combined in different vegetation indices (“remote sensing”, RS). The DH lines were genotyped with the DarTseq method, to obtain data on single nucleotide polymorphisms (SNPs). After quality control, 9051 markers remained. Missing values were “imputed” by the empirical mean of the marker scores of the respective locus. We used the data for comparison of genome-wide association studies and genomic prediction when based on different phenotyping methods, that is either VS or RS data. The data may be interesting for reuse for instance for benchmarking genomic prediction models, for phytopathological studies addressing common rust, or for specifications of vegetation indices. |
| format | Journal Article |
| id | CGSpace172570 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | CGSpace1725702025-12-08T10:11:39Z Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations Loladze, Alexander Rodrigues, Francelino Petroli, Cesar Muñoz-Zavala, Carlos Naranjo, Sergio San Vicente Garcia, Felix M. Gerard, Bruno Montesinos-Lopez, Osval A. Crossa, Jose Martini, Johannes W.R. remote sensing unmanned aerial vehicles genome-wide association studies genomics forecasting disease resistance breeding high-throughput phenotyping maize Three F2-derived biparental doubled haploid (DH) maize populations were generated for genetic mapping of resistance to common rust. Each of the three populations has the same susceptible parent, but a different resistance donor parent. Population 1 and 3 consist of 320 lines each, population 2 consists of 260 lines. The DH lines were evaluated for their susceptibility to common rust in two years and with two replications in each year. For phenotyping, a visual score (VS) for susceptibility was assigned. Additionally, unmanned aerial vehicle (UAV) derived multispectral and thermal infrared data was recorded and combined in different vegetation indices (“remote sensing”, RS). The DH lines were genotyped with the DarTseq method, to obtain data on single nucleotide polymorphisms (SNPs). After quality control, 9051 markers remained. Missing values were “imputed” by the empirical mean of the marker scores of the respective locus. We used the data for comparison of genome-wide association studies and genomic prediction when based on different phenotyping methods, that is either VS or RS data. The data may be interesting for reuse for instance for benchmarking genomic prediction models, for phytopathological studies addressing common rust, or for specifications of vegetation indices. 2024-06 2025-01-30T18:12:21Z 2025-01-30T18:12:21Z Journal Article https://hdl.handle.net/10568/172570 en Open Access application/pdf Elsevier Loladze, A., Rodrigues, F. A., Petroli, C. D., Muñoz-Zavala, C., Naranjo, S., San Vicente, F. M., Gerard, B., Montesinos-Lopez, O. A., Crossa, J., & Martini, J. W. R. (2024). Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations. Data In Brief, 54, 110300. https://doi.org/10.1016/j.dib.2024.110300 |
| spellingShingle | remote sensing unmanned aerial vehicles genome-wide association studies genomics forecasting disease resistance breeding high-throughput phenotyping maize Loladze, Alexander Rodrigues, Francelino Petroli, Cesar Muñoz-Zavala, Carlos Naranjo, Sergio San Vicente Garcia, Felix M. Gerard, Bruno Montesinos-Lopez, Osval A. Crossa, Jose Martini, Johannes W.R. Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title | Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title_full | Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title_fullStr | Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title_full_unstemmed | Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title_short | Multispectral and thermal infrared data, visual scores for severity of common rust symptoms, and genotypic single nucleotide polymorphism data of three F2-derived biparental doubled-haploid maize populations |
| title_sort | multispectral and thermal infrared data visual scores for severity of common rust symptoms and genotypic single nucleotide polymorphism data of three f2 derived biparental doubled haploid maize populations |
| topic | remote sensing unmanned aerial vehicles genome-wide association studies genomics forecasting disease resistance breeding high-throughput phenotyping maize |
| url | https://hdl.handle.net/10568/172570 |
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